Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 152 9e-32 seq20 149 1e-30 seq28 129 1e-24 seq23 86.0 1e-11 >seq2 Length=1405217 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||| ||| || |||||||| || ||| Sbjct 409095 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 409154 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || || || || ||| Sbjct 409155 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGA 409214 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 409215 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 409274 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||| ||||||||||| |||||||| Sbjct 409275 TCAAGGGTGATCGTCTTCCCCGTGAGAGTCTTGACGAAAATCTGCAT 409321 >seq20 Length=1074596 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| ||||||| | Sbjct 147039 CCACCACGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 147098 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || || | |||||||| || || Sbjct 147099 AGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGG 147158 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||| ||||| | || || || Sbjct 147159 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACC 147218 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||| ||||| || || |||||||||||||| Sbjct 147219 TCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 147253 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || |||||||| || |||||||| ||||||| | Sbjct 147670 CCACCACGGAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 147729 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | || || ||||| || || Sbjct 147730 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGG 147789 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||||||||| | || || || Sbjct 147790 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 147849 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || ||||| Sbjct 147850 TCGAGGGTAATGGTCTTGCCCGT 147872 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| || || || || || || ||||| || ||| | Sbjct 146811 CCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTG 146870 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || |||||||| || |||| || || || || ||| Sbjct 146871 AGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGA 146930 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||| || || || || || | ||| ||||| Sbjct 146931 ATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACC 146990 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||||||||| |||||||| || |||||||| Sbjct 146991 TCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || || || || ||||||||||| ||| Sbjct 146583 CCACCACGGAGACGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTC 146642 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || ||| Sbjct 146643 AGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGA 146702 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| ||| |||||||| || ||| || || Sbjct 146703 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCGCTTGACTCAACC 146762 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || | |||||||||||| || ||||| Sbjct 146763 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||||| || || || || || | |||||||| || || ||||| |||||||| |||||| Sbjct 147468 TGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATC 147527 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || | |||||| ||||| ||||| | || || || || | ||| ||||| || || Sbjct 147528 TTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCCA 147587 Query 68436 GTGAGGGTCTTGAC 68449 |||||||||||||| Sbjct 147588 GTGAGGGTCTTGAC 147601 >seq28 Length=801081 Score = 129 bits (142), Expect = 1e-24 Identities = 668/1045 (64%), Gaps = 58/1045 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| ||||||||||||| ||||| ||| |||||| Sbjct 420317 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCCAGGTGGTTATCAATGTGGGCGAAAGCG 420258 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 420257 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTGGGG 420198 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 | || || || ||||| || ||||| || |||| |||||| ||||| ||||| ||||| Sbjct 420197 ATAAGC-TCACCAGTGAGAACGTTGATCAGGGTAGACTTGCCGGCACCGTTGGGACCAAT 420139 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCC 225219 ||| |||| |||||| | || ||| || | | || | |||||| |||| Sbjct 420138 GACGGCAATACGGGATCCAAGTGAGCACTGGAAGCTGATGTCGG---AGATCTG-GGGC- 420084 Query 225220 AGTTTGGTAAGCAA-AGGCCAC--GCCACGCAGCTTCATG---------ATGGCACGGTC 225267 |||| | | | ||| || | | || ||| || ||||| | | Sbjct 420083 ---TTGG-AGGTACCAGGGTACTGGAAAGACATCTTGGTGGCACGGAGAATGGCCTTGGC 420028 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||| ||||| ||| | || | | | Sbjct 420027 CTTGGTCTTGACACCCTCAAGGAAACCGGGCTCAGGGAAGCTGAACTCGATCTCGGAAGC 419968 Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTCGGGT-CGCTTTGCCACGAAAGCAGACAGGTTTC 225386 || |||||||| || || ||| ||| ||| ||||| |||| |||||| | Sbjct 419967 ACCAAGCTCGTAGTAGGACTTGGCAGAGGGAACGCGCTGC-ACGAAGGCAGCCAGGTTAC 419909 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | || | ||||||||| | || |||| ||||| || ||| | ||| || | Sbjct 419908 CCCTGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGAACGATGTGCTG-GCAGACGTTG 419853 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA- 225503 || ||||| |||||||||||||| ||||||||||| | || | || |||| Sbjct 419852 TCGAGGAAACCAGAGTCGTGGGAGACAATGATGGAGGTGCAAG-------GGGAGTTGAT 419800 Query 225504 --GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||| | |||||| ||||| | || |||| ||||| ||||| ||||| || Sbjct 419799 AAGGTACTCCTCGAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAG 419740 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 ||||| || |||| | || | || || |||| ||||||||| ||||| || Sbjct 419739 CAGCAGAATATCAGGGGCCTCGAAAACAGCACGGCACAGAGCCAGCTTCATCTTCCAACC 419680 Query 225622 CCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAG 225681 ||||| |||| ||| | | || | | ||| |||||| | ||| |||| Sbjct 419679 ACCGGAAAGGGCAGTGATCTCACCGGAAATCATCTGCTCGGTGAAGCCGAATTCCTGGAG 419620 Query 225682 ---CGTCTGGATAATGCGCTCGGGAGAGCTG---CGAGC---GGCAACGTTGGGGTCGGA 225732 | ||| || | | ||| | | | || | ||| | ||| || || Sbjct 419619 TTGCTTCTCGACATCGGGCTGAGTGGTGGTGACACCAGCCTCGCCAAGCTTCTTCATGGT 419560 Query 225733 CGAGAGGTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792 | || | || | |||||| || | | ||| | ||| | |||||| || ||| | Sbjct 419559 CCAGTCG--ATGGT----GGTCATCTCAGTGTCAGCAGAGTCCAAGTCGTGCTCGACGAA 419506 Query 225793 CACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCAC 225851 || ||| || || | || | |||||| ||||| | ||| | || || || | Sbjct 419505 GACAGTCTTGACCTCGCTCTGCTT-GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGC 419447 Query 225852 GGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCT 225911 | | ||||| ||| || | ||||||||||| ||| ||||| | | || |||| Sbjct 419446 GCATGAGGGTGGACTTTCCGGAACCGTTGGGACCACAGAGACCGTAGCGCTGACCACGCT 419387 Query 225912 TGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGC 225971 ||| |||| | || ||| || || |||||| |||||||||| |||||||| | Sbjct 419386 TGAGACGGAGGTGAGTCTGGTTGAGAAGAATCTTGGCACCATAGGCGAGGGAGAAGGTAC 419327 Query 225972 AATCGCACAGGTCCTCACCCTCCTC 225996 | | ||| || |||||||||||||| Sbjct 419326 AGTTGCAAAGATCCTCACCCTCCTC 419302 >seq23 Length=959658 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||| || ||| | |||||||| |||| | || | | Sbjct 870421 TAACGCCACTGCAGGTACTGGTTAGGAGTCTTCTCCAGGTGCATCTCGACGTGCTCCAGG 870480 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| ||||||||||||| || || || Sbjct 870481 GCGTGCTGCTTAATGTAGCCGATACGCAGGTTGGGATGCTTCTCGACCTTTCCGGTGGTG 870540 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | ||||||||| || | |||||||||||| | |||||| || || |||||||| Sbjct 870541 GGAATAGTCTCGCCGGTAAGCAGCTTGATGAGCGTCGACTTGCCAGCTCCGTTGGGGCCG 870600 Query 225158 AT 225159 || Sbjct 870601 AT 870602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621167330040