Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq30 392 6e-104 seq35 351 2e-91 >seq30 Length=762562 Score = 392 bits (434), Expect = 6e-104 Identities = 1205/1848 (65%), Gaps = 59/1848 (3%) Strand=Plus/Plus Query 243761 GCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGG 243820 ||||||| || | ||||||||||||||| |||||||| ||| |||| | || | Sbjct 621211 GCGGCCTGCGTTCGCAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCTGTGAAG 621270 Query 243821 TGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTG 243880 |||||| || | ||| ||| || | ||||| || || |||| Sbjct 621271 TGCATGCTGGTGATCTTGCCCATGGTGGG---------GTCCTT---CATGTGGATGTTG 621318 Query 243881 AGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTC 243940 ||||||||| ||| || | |||| | || || || ||||| || || | | Sbjct 621319 AGGGACTGGGACTGATCAATAAAGGCACCTCGGTCGGCAGCCATCTGGACGACCTGGCGC 621378 Query 243941 TGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATG 244000 || || ||||| || | |||||||| | | ||||| | | |||| | |||| Sbjct 621379 TGTGAAATCTCCCACACAGTCTTGTACAGAGCCTTGACTTCGGCAGGGATGTTTGGGATG 621438 Query 244001 TTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCC 244060 ||||| | ||||| || | | | |||| || | |||| ||| ||||| ||| Sbjct 621439 TTCTGGATGGAGCCGTTCTCGGCAATGATTCGGTTCTTCATGGCATCCGACCACAAACCC 621498 Query 244061 AAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACG 244120 | | | || ||| || ||| |||||| ||||| ||||| || | || || Sbjct 621499 ATGTCGACGAGATCCTTGAGCAGCCAGGGGTTCACGACCTGGAACTCACCAGCAAGGACT 621558 Query 244121 CGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGC 244180 ||||||||||||| |||| || ||||| | || ||| | |||||||| |||||| Sbjct 621559 CGGCGCTGGTAGATGTTGGAAGTGTAAGGCTCAAAGCACTCGTTATTGCCCAGGATCTGC 621618 Query 244181 GCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGG 244240 | || || ||||| |||||||| | | |||| |||||| | | ||||| || | Sbjct 621619 GAGGTACTGGCAGTGGGCATGGGTGCAAGGAGCAAACTGTTGCGGATACCGTGTTCCTTG 621678 Query 244241 ATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCC 244300 | | |||||| | ||||||||| | | | ||| | | || |||| | Sbjct 621679 ACCTGCTCTCTGAGAGTCTCCCAGTCCCAAAGGTCGGAGGGCT--TCACGTT-------C 621729 Query 244301 CACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGA 244360 ||||| || ||||| || | |||| | | ||| ||||| | |||| | ||||||| Sbjct 621730 CACATATCGAACTGGAGGATACCCTCGGAAGCAGGGGAGCCCTTGAAGGTGGAGTAGGGA 621789 Query 244361 CCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 || || || ||||||| || | || ||| || |||| ||||||||||| || Sbjct 621790 CCTTCCTCCTTAGCCAGCTGCACCGAGGCAGT-GAGAGCAGCGTGATAGATGGTCTCAAA 621848 Query 244420 GATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATG 244477 ||| |||||| | || || |||| | | || |||||| |||| || | | Sbjct 621849 AATCTGCTTGTTGAGCTCACGAGCCT--CAGGAGACTCGAAGGGCATGCGCAGAGCAAGG 621906 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 || | || || || ||||| ||||| | ||||| |||| ||| ||| ||||| | Sbjct 621907 AAAGCATCCGCAAGACCCTGGACGCCAACACCGATAGGTCGGTGACGCATGTTGCTGTTG 621966 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATC 244597 ||| || || || || || ||| | || || | | ||||||| ||||| || Sbjct 621967 CGGGCCTCAGGGACAGGATAGTGGTTCACATCAATGATCCTGTTGAGATTGCGAACGACA 622026 Query 244598 ATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTG 244657 | || ||| | | |||| || ||||| || | ||| || ||| | || || Sbjct 622027 ACCTGGGTGACCTTGTGCAGCTTCTCGAAGTCATA---GCAGGCTTCATCGTAGTTGATG 622083 Query 244658 ATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAG 244717 || | || |||| | ||||||||||| || || ||||| || | | Sbjct 622084 T---------ACGAGGGCAGAGCGAGGGATGCCAGGTTGCACACAGCAACCTCATCAGGG 622134 Query 244718 TTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGG 244777 ||||| | |||||| ||||| | ||| || ||||| ||||||| || Sbjct 622135 GCACAGTACTCAATAATCTCAGTGCACAAGTTGGAGCTTCGAATGGTACCCAGGTTCTTC 622194 Query 244778 TGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGC 244837 || || |||| ||||||| ||||||||||||||||||||| || |||||| | Sbjct 622195 TGGTTACTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTC 622254 Query 244838 TGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC 244897 || || | || | | |||||| | | |||||||| ||| ||||| ||||||| Sbjct 622255 TGAGCCTCAAGAATAGCATACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCA 622314 Query 244898 TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCG 244957 | |||||| ||||| ||||| ||||| ||| || ||| | || ||| Sbjct 622315 GCCTGCTCGTACTTCTCATACAGAGCCTCAAACTCATCGCCGTAGCAGTCGGCAAGACCG 622374 Query 244958 GGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAG 245017 |||||| ||||||||||| |||| |||||| | || || | || ||||||| Sbjct 622375 GGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACGCTTCATGAAG 622434 Query 245018 AGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG 245077 || |||||||||||||| || |||| ||||| | | | ||| ||| ||| | Sbjct 622435 AGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGG 622494 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 ||||| | ||| || | || |||||||| || |||||||||||| | ||||| |||| Sbjct 622495 TTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGCTCAAGGTAGATAGCG 622554 Query 245138 AGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG-AGCG-CGTTGAAGA 245195 | ||| || || ||||||||||| ||||||| || ||| || | || | |||||||| Sbjct 622555 AAGGCACCAGGTCGCTTGTTGCCACCCTGGT-CAACAT-ATCGGGCAGTGTTGTTGAAGA 622612 Query 245196 TGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT 245255 || || | || | |||||| || |||||||| || |||||||| ||| Sbjct 622613 CTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGCGATGTAGGAGCCGG 622672 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 || | | || | | | | || || | || || || |||||| || | ||| | Sbjct 622673 TGGCACGGATGCGGTGCACGTTCAGACCAATGCCACCAGCCATCTTGGAAATCATGGCAC 622732 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 || |||||| || || || ||||| ||||||||| |||||||| | ||| |||| Sbjct 622733 AGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTCATGTCAACCAGGAAGC 622792 Query 245376 AGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 | || ||||||||||||| || ||| | ||||| ||||||||| ||||||||| | Sbjct 622793 ATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTGGGGGAGGCGTGGGTGA 622852 Query 245436 AGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGA 245495 || | |||||| | || ||| |||| || | | || || | ||| || || Sbjct 622853 AGAACTTGCTCGACATGAGGTTGTATGTCTCAAGGACACGCTCAATATCGTCACCCCAGA 622912 Query 245496 T--CTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGGT- 245551 | | || | | || | ||||| ||||||| ||||| ||||| | || || Sbjct 622913 TGCCAACA-GACACA-CGCATGATCATGTGCTGAGGGCG-CTCGA-----CAATCTTGTT 622964 Query 245552 ----CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 |||||| | ||| || ||||| || |||||||| |||||||| Sbjct 622965 ATCAATCTTGAGGAGGTATGATCGCTCCAGAGTCTTGAAGCCAAAGTA 623012 >seq35 Length=674057 Score = 351 bits (388), Expect = 2e-91 Identities = 600/855 (70%), Gaps = 18/855 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| ||||||||||||||||||||||||| Sbjct 114604 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATTGACCTG 114663 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA----ACGAAAAGTTTTTCCTCAA 42415 | ||||| | | | | ||| || | || | |||| |||| || || Sbjct 114664 TCTAAGGAT-CTTCATGATTGGAACAACCGCCTAACTGCCGACGAGCAGTTCTTTGTCTC 114722 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| || || ||||| ||||| ||||| |||||||| | | Sbjct 114723 TCACATCCTTGCCTTCTTTGCTGCTTCTGATGGCATTGTCAACGAGAACCTCGTTGAGCG 114782 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||| ||||| ||| | |||||| || |||||||| || |||||||| || Sbjct 114783 GTTCAGTGGCGAGGTCCAGATCCCTGAGGCCCGATGCTTCTATGGATTCCAGATCATGAT 114842 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 ||||| | || |||||| ||| | || || |||| |||||| ||| || Sbjct 114843 GGAGAATATCCATTCTGAGACCTACTCGCTGCTTATCGACACTTACATCAAGGAGCCTTC 114902 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 |||| | | || ||||| || || ||||| || ||||| ||| |||||||| || Sbjct 114903 TCAGCGCACCTACCTCTTCAATGCTATCGAGACCATCCCCTGTATCCGAAAGAAGGCCGA 114962 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||| || |||||| || | | || | | | || | | || | ||||| |||| Sbjct 114963 TTGGGCCATCCGATGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGTCTGGTTGCCT 115021 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | || |||||||| || |||||| ||||||||||| |||||||||||||||||| Sbjct 115022 TCGCTGCTGTCGAGGGTATTTTCTTCAGCGGCGCCTTCGCTTCCATCTTCTGGCTCAAGA 115081 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| | ||||| || || || ||||| ||||| |||||| | |||||||| Sbjct 115082 AGCGCGGTCT-TATGCCTGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGGT 115140 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAA 42892 || || | |||||||| |||||||| ||| ||||||| ||| | ||| | || Sbjct 115141 CTCCACACCGACTTTGCTTGCCTCCTCCACTC---CCACCTCAAGGGCCGTGCCAGC-AA 115196 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 | || | | || |||||| || || |||||| | |||||| |||||||||| || | Sbjct 115197 GCAGGTCATTCAGGACATCATTACTGATGCCGTGAACATCGAGCAGGAGTTCCTTACCGA 115256 Query 42953 GTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | | ||||| ||| ||||| |||||||||| |||||||||| ||||||| ||| Sbjct 115257 GGCTCTGCCTTGTG-CCCTGCTCGGCATGAATGCCGACCTCATGAAGCAGTACATTGAGT 115315 Query 43012 ACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGC 43070 ||| || |||| || || || | ||| || | |||| || | | | Sbjct 115316 TCGTTGCTGACCGACTACTCGTCGCTCTTGGTAACGAGAAG-GTCTATAAGTCTTCCAAC 115374 Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 ||||||||||| |||||||||||||| | | |||||||||||||| ||||||||||| Sbjct 115375 CCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGT 115434 Query 43131 GTCGCCGACTACCAG 43145 |||| ||||||||| Sbjct 115435 GTCGGTGACTACCAG 115449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337936946320