Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20 136 9e-27 seq2 123 6e-23 seq35 114 3e-20 >seq20 Length=1074596 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || || || || | || ||| || || || || |||||| | Sbjct 146811 CCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTG 146870 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | |||||||| |||||||| || ||||| ||| || ||| Sbjct 146871 AGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGA---TCCGGG 146927 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| |||| || || || || |||| |||| || ||| Sbjct 146928 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCT 146987 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || ||||||||||| || |||||||| Sbjct 146988 ACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || |||| || ||| || ||||| ||||||||| Sbjct 146580 TGGCCACCACGGAGACGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCG 146639 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| ||||| || | || || || || ||||| || ||||| || | Sbjct 146640 CTCAGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGA 146699 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || |||||||| || | |||||||| || || | |||||| || || Sbjct 146700 GGAATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCGCTTGACTCA 146759 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||| ||||||||||| || ||||| Sbjct 146760 ACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || || |||||| Sbjct 147039 CCACCACGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 147098 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || || ||||||||||||||||| | ||| Sbjct 147099 AGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGG 147158 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || |||| ||| || || || Sbjct 147159 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACC 147218 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||||| || || ||||| || || || |||||||| Sbjct 147219 TCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 147253 >seq2 Length=1405217 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||||| || || ||||| || |||||| Sbjct 409095 CCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 409154 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| ||| || ||| Sbjct 409155 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGA---TCCGGG 409211 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 409212 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 409271 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || |||||||||||||| |||||||| Sbjct 409272 ACCTCAAGGGTGATCGTCTTCCCCGTGAGAGTCTTGACGAAAATCTGCAT 409321 >seq35 Length=674057 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||| || || ||| | || ||| | || |||| ||||||||||| |||||||| Sbjct 115243 GAGTTCCTTACCGAGGCTCTGCCTTGTGCCCTGCTCGGCATGAATGCCGACCTCATGAAG 115302 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 || || || || ||||| ||||| || | || || || ||| | ||||| || || Sbjct 115303 CAGTACATTGAGTTCGTTGCTGACCGACTACTCGTCGCTCTTGGTAACGAGAAGGTCTAT 115362 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 || || || ||||||| ||| ||||| || || |||| || ||||| |||||| Sbjct 115363 AAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTC 115422 Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324 ||||| ||||||||| | ||||| || Sbjct 115423 TTCGAGAAGCGTGTCGGTGACTACCA 115448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652782767546