Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq35 111 3e-19 seq28 98.7 2e-15 seq65 86.0 1e-11 >seq35 Length=674057 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 ||||| || || || || | | ||| |||| ||| || ||| ||| | || || Sbjct 115213 ATCATTACTGATGCCGTGAACATCGAGCAGGAGTTCCTTACCGAGGCTCTGCCTTGTGCC 115272 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | |||||||| | || |||||| |||||||| || ||||| || ||||| | Sbjct 115273 CTGCTCGGCATGAATGCCGACCTCATGAAGCAGTACATTGAGTTCGTTGCTGACCGACTA 115332 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| |||||| | ||||| || || || || |||||||| | ||| |||||| Sbjct 115333 CTCGTCGCTCTTGGTAACGAGAAGGTCTATAAGTCTTCCAACCCCTTCGACTTCATGGAG 115392 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| || || || || || ||||||||||| ||||||||| |||| || || Sbjct 115393 AACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 115448 >seq28 Length=801081 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||| ||| |||| || |||||||| || || || || || | || Sbjct 419481 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATGAGGGTGGACTTTCCGGAACC 419422 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| ||||||||||| | |||||||| ||| || | || | ||| || Sbjct 419421 GTTGGGACCACAGAGACCGTAGCGCTGACCACGCTTGAGACGGAGGTGAGTCTGGTTGAG 419362 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 |||||| || ||||||| || || || || ||| | || ||||||||||| Sbjct 419361 AAGAATCTTGGCACCATAGGCGAGGGAGAAGGTACAGTTGCAAAGATCCTCACC 419308 >seq65 Length=1864066 Score = 86.0 bits (94), Expect = 1e-11 Identities = 226/340 (66%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAA-TCTCGAACCGAACTG 297495 ||||| |||| || | ||| ||| ||| |||||| ||| | || |||||||| | Sbjct 697523 GTGAAGGTATAACGAGGACTGGCGGCATCTGCACCACC-TGCTAGTCGAGAACCGAAGTT 697581 Query 297496 GCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 ||| || || || |||||||||||| ||| ||| | | ||| || ||| | Sbjct 697582 GCCACTTGGTTCCAGGCAATTGATGTTATTGGATCCCACAAAGTTCTGAGCCAGGCCTAT 697641 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC 297615 ||||| || || ||| ||||||| ||||| || || | || || | ||| ||||| Sbjct 697642 AATGGTTTGCTGGAGGGATCCTTCGCCGTGGTGGTATGCAGTTTGTTCAGAAACATAACC 697701 Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCAC 297675 |||| | |||||| ||| | ||| || | |||||| || || | ||| Sbjct 697702 AGCCAACTCCACCACCTTCTTGTCTTTGACCAAGTTTCTCTTGAAGCATGCGTAGAGCAC 697761 Query 297676 TTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTA 297735 || || ||| ||| ||||||||||| | ||| || |||||| ||| || | | Sbjct 697762 CTTGCGCTGACCAGGCTTGAAACCATCCAGGACAGAAGGAATGGATCG---CATGTTAT- 697817 Query 297736 CCGCGA----GAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 | || | ||| | ||| |||||| ||| ||||||||| Sbjct 697818 CAGCCATGCTGAAGAGAATGAGTTCCCTGTTGATGAAGTC 697857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878488020450