Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq20 111 2e-19 seq2 107 2e-18 >seq20 Length=1074596 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||||| | ||| || |||||| || ||||| |||| Sbjct 146844 GATTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCG 146903 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || ||||| || || || || ||||| ||| || |||| | Sbjct 146904 AAGATAAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACA 146963 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | || |||| ||||| ||||||| || | || || || || ||||| || Sbjct 146964 TTG-TCAATAGTATCGGATGACTCTACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTT 147022 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 147023 GACAAAGATCTGCAT 147037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| | || || ||||||||||| || || | | Sbjct 147072 GACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCA 147131 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| |||||||||||||| || || || || || ||||| ||| | || | || Sbjct 147132 AAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 147190 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| ||||| ||||||| || | || || ||||| || || | Sbjct 147191 ATTG-TCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTCT 147249 Query 138599 TTACAA 138604 | |||| Sbjct 147250 TGACAA 147255 >seq2 Length=1405217 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || || || | | | Sbjct 409130 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 409189 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| || ||||| || || || || ||||| ||| || || | | Sbjct 409190 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 409249 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || ||||| || || Sbjct 409250 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGAGTCTTGAC 409309 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 409310 GAAAATCTGCAT 409321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261736249040