Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 seq20 116 4e-21 seq32 91.5 1e-13 >seq2 Length=1405217 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || ||||| ||| || ||||| || ||||| | Sbjct 409130 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 409189 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||| | |||||||||||| || || ||||||||||||||| ||| || ||||| ||| Sbjct 409190 GATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 409249 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| |||||| | | ||| || || | ||| | ||| || || || ||||| || | Sbjct 409250 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGAGTCTTGA 409308 Query 127101 CAAAAATCTGCAT 127113 | ||||||||||| Sbjct 409309 CGAAAATCTGCAT 409321 >seq20 Length=1074596 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||| || | ||||| || || ||||| ||||| |||| Sbjct 146811 CCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTG 146870 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||||||||| ||| |||| | |||||||||||| || || Sbjct 146871 AGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGA 146930 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | || | || || | ||| || Sbjct 146931 ATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACC 146990 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || ||||| || ||||| |||||||| Sbjct 146991 TCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 113 bits (124), Expect = 4e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | | ||||| ||| || ||||| || || Sbjct 147700 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 147759 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || || || ||||||||||||||| || || |||| Sbjct 147760 GCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 147819 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| |||| |||||||| |||||| |||| ||| | || ||||| |||| Sbjct 147820 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 147874 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || || || |||| || |||||| || || ||||| || ||| Sbjct 146613 GTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGCTTACCA 146672 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || ||||| || |||||||||||| ||| || ||| Sbjct 146673 GCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTC 146732 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | ||| || || | || | || || ||||||| || Sbjct 146733 ACGTTG-TCGATGGTATCGCTTGACTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGT 146791 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 146792 CTTGACGAAAATTTGCAT 146809 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | | || || ||| || || || || ||| Sbjct 147069 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTCGAGTTGCTTGCCA 147128 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||| || || || || ||||||||||||||| || || |||| Sbjct 147129 GCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 147188 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| |||| ||| | || ||||| || || || Sbjct 147189 ACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTC 147248 Query 127097 TTTACAA 127103 || |||| Sbjct 147249 TTGACAA 147255 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | | ||||| ||| || ||||| || || Sbjct 147352 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 147411 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 ||| | |||||||||||||| || || || ||||||||||||||| Sbjct 147412 GCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 147456 >seq32 Length=2292469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || ||||| |||| | |||||||||||| || || ||||||||||| Sbjct 449957 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 450016 Query 127018 GTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 |||| ||| || ||||| |||| |||| ||||| | |||||| || | ||| | Sbjct 450017 GTCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGGAGGACTCGACCTCAAGGGTGA 450075 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 450076 TGGTCTTGCCCGTCAGGGTCTTCACGAAA 450104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500164017680