Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq30 208 9e-49 seq35 159 4e-34 >seq30 Length=762562 Score = 208 bits (230), Expect = 9e-49 Identities = 1083/1697 (64%), Gaps = 71/1697 (4%) Strand=Plus/Plus Query 115526 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 115584 |||| ||||| ||| || ||| ||||| | ||| ||||||||||| || |||||||| Sbjct 621191 TGAATTGAATAGGGGCT-GCCGCGGCCTGCGTTCGCAGGTAGTACATGCCAGTCTTGAGA 621249 Query 115585 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 115644 || |||||||| | | ||||| || | |||| | || || | |||| Sbjct 621250 CCAAGCTTCCAGCCTGTGAAGTGCATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATG 621309 Query 115645 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 115704 || ||| | ||||| ||||| || ||| || || || || ||||| | | Sbjct 621310 TGGATGTTGAGGGACTGGGACTGATCAATAAAGGCACCTCGGTCGGCAGCCATCTGGACG 621369 Query 115705 ACATCCTTCATCT-TGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 || || || ||| | ||||||||||| |||| || ||| | || | ||| Sbjct 621370 AC---CTGGCGCTGTGAAATCTCCCACACAGTCTTGTACAGAGCCTTGACTTCGGCAGGG 621426 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCC 115818 || | ||| || ||||| ||||| || | | |||| | | |||||| | Sbjct 621427 ATGTTTGGGATGTTCTGGATGGAGCCGTT---CTCGGCAATGATTCGGTTCTTCATGGCA 621483 Query 115819 TTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAAC 115874 | ||||| | ||| || | |||||||| | | ||| | || || || Sbjct 621484 TCCGACCACAAACCCATGTCGACGAGATCCTTGAGCAGCCAGGGG----TTCACGACCTG 621539 Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 |||||||| || ||| || | | | |||||||||| ||||| |||||||||||||| Sbjct 621540 GAACTCACCAGCAAGGACTCGGCGCTGGTAGATGTTGGAAGTGTAAGGCTCAAAGCACTC 621599 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || || |||| ||| || | || ||| |||||||||||||| | ||| | ||||| Sbjct 621600 GTTATTGCCCAGGATCTGCGAGGTACTGGCAGTGGGCATGGGTGCAAGGAGCAAACTGTT 621659 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GT-TGAGCT 116050 ||||| ||| || | | | || |||| | |||||||| | || ||| Sbjct 621660 GCGGATACCGTGTTCCTTGACCTGCTCTCTGAGAGTCTCCCAGTCCCAAAGGTCGGAG-- 621717 Query 116051 TTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 116110 | || | | | ||||||||| |||||||||||||| | ||| || || || |||| | Sbjct 621718 --GGCTTCACGTTCCACATATCGAACTGGAGGATACCCTCGGAAGCAGGGGAGCCCTTGA 621775 Query 116111 ATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGT 116167 | || || || || || ||| |||| | | ||| || ||| || |||| Sbjct 621776 AGGTGGAGTAGGGACCTTCCTCCTTAGCCAGCTGCACCGAG---GCAGTGAGAGCAGCGT 621832 Query 116168 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 116227 |||| || ||||||||||| | || | | ||||| || || || | | Sbjct 621833 GATAGATGGTCTCAAAAATCTGCTTGTTGAGCTCACGAGCCTCAGGAGACTCGAAGGGCA 621892 Query 116228 GACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 116286 | ||| | || || ||||||| ||||| ||||| || | || || || || || Sbjct 621893 TGC-GCAGAGCAAGGAAAGCATCCGCAAGACCCTGGACGCCAACACCGATAGGTCGGTGA 621951 Query 116287 CTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTA 116343 | ||| || || || || ||| || ||||| ||| ||| || | ||| Sbjct 621952 CGCATGTTGCTGTTGCG---GGCCTCAGGGACAGGATAGTGGTTCACATCAATGATCCTG 622008 Query 116344 TTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA 116403 || ||||| |||||||| |||| | || ||||| ||| | ||| | | | | Sbjct 622009 TTGAGATTGCGAACGACAACCTGGGTGACCTTGTGCAGCTTCTCGAAGTCATAGCAG-GC 622067 Query 116404 GTC-TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 || || | |||| ||| || || |||| || ||||| || ||||||| ||| Sbjct 622068 TTCATCGTAGTTGATGTACGAGGGCAGAGCGAGGGATGCCAGGTTGCACACAGCAACCTC 622127 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 ||| || |||||| ||||| || || ||||| || || || |||||| |||| Sbjct 622128 ATCAGGGGCACAGTACTCAATAATCTCAGTGCACAAGTTGGAGCTTCGAATGGTACCCAG 622187 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 |||||| || || ||| ||| || |||||||||||||| | || | || || Sbjct 622188 GTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGT 622247 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG 116641 ||| || || | || |||||||| | ||| | | || | | || | ||| ||| Sbjct 622248 CTCGGTCTGAGCCTCAAGAATAGCATACCAGAGCTTCTGAGCCTTG----ATGGTCTTG- 622302 Query 116642 CTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG 116695 || |||| ||| ||||||||| || || ||||||||||| || || || Sbjct 622303 --CGACCCTTGCCAGCCTGCTCGTACTTCTCATACAGAGCCTCAAACTCATC-GCCGTAG 622359 Query 116696 C-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | || | || || || || || || || | ||| | ||| | || || |||| Sbjct 622360 CAGTCGGCAAGACCGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCA 622419 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || |||||||||||||| || ||||||||||| || ||| || || ||| |||| | Sbjct 622420 ACACGCTTCATGAAGAGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACC 622479 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 || || | || || || |||| || | || || | || ||||| |||||| || Sbjct 622480 TCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGC 622539 Query 116875 TCCAGGTACACCGCGATTG-ACC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGC 116930 || ||||| | |||| | ||| | || | | ||| |||||| ||||| | || Sbjct 622540 TCAAGGTAGATAGCGAAGGCACCAGGTCGCTTGTTG-CCACCCTGGTCAACATATCGGGC 622598 Query 116931 CGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCC 116989 || ||| || || || ||||| || ||| || | || || || || || | Sbjct 622599 AGTGTTGTTGAAGACTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGC 622658 Query 116990 GA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 117048 || || ||| | | |||| | || ||| | || || |||||| || || ||| | Sbjct 622659 GATGTAGGAGCC--GGTGGCACGGATGCGGTGCACGTTCAGACCAATGCCACCAGCCATC 622716 Query 117049 TTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 117108 || || || || || | ||||| | | ||||| || || || ||| |||| Sbjct 622717 TTGGAAATCATGGCACAGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTC 622776 Query 117109 TTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 117168 | | | |||||||| |||| || ||| || || ||||| ||||| || || Sbjct 622777 ATGTCAACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTG 622836 Query 117169 GGTGTCGCGTGGATGAA 117185 || | |||||| |||| Sbjct 622837 GGGGAGGCGTGGGTGAA 622853 >seq35 Length=674057 Score = 159 bits (176), Expect = 4e-34 Identities = 360/536 (67%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 115446 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 115387 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| || || | | || | | ||| | | ||| || Sbjct 115386 GAAGTCGAAGGGGTTGGAAGACTTATAGACCTTCTCGTTACCAAGAGCGAC--GAGTAGT 115329 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||||||||||| ||| || | ||||| |||| ||| | Sbjct 115328 CGGTCAGCAACGAACTCAATGTACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGGGCA 115269 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | |||| ||| ||| |||| ||| || || | |||| | Sbjct 115268 CAAGGCAGAGCCTCGGTAAGGAACTCCTGCTCGATGTTCACGGCATCAGTAATGATGTCC 115209 Query 127469 TGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 ||||| | | | || | | ||| | | | || ||| || |||||| Sbjct 115208 TGAATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CA-AGCAAAG 115152 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || |||||||||||||||||| |||||||| || || ||||| |||||| ||||| Sbjct 115151 TCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCAGGCATA 115092 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 ||||| |||||||| | |||||| || | | || | ||| |||||| || ||||| Sbjct 115091 AGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCCTCG 115032 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 127705 ||| ||||| |||| ||||||| ||||||||| | ||| | | ||| Sbjct 115031 ACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGG 114972 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || ||||| | ||||| || |||||| |||| ||||| ||| || | ||||| Sbjct 114971 ATGGCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATTGAAGAG 114916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506379434120