Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq20 127 5e-24 seq2 125 2e-23 >seq20 Length=1074596 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| |||||| ||||| ||||| || ||||| || | ||||||||| | ||| Sbjct 146817 CGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTGAGAGTT 146876 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || ||||| |||||||||||||| || |||||||| ||||| ||| || Sbjct 146877 CGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGAATGCCC 146936 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | || || | || ||||| || | Sbjct 146937 TCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACCTCGAGG 146996 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||||||||| || ||||| || || Sbjct 146997 GTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTG 147034 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| || ||||| |||| ||| ||||| || ||| | || || Sbjct 146598 AGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCC 146657 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| ||| ||| || || ||| Sbjct 146658 TCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 146717 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || ||| || || || | ||||| ||| Sbjct 146718 TGGATCTTGGACTTCACGTTGTCGATGGTATCGCTTGACTCAACCTCAAGAGTGATGGTC 146777 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || |||||||| Sbjct 146778 TTTCCGGTCAAGGTCTTGACGAAAATTTG 146806 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| |||||||| |||| |||||| || || | || | ||||| Sbjct 147685 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCC 147744 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| || | |||||||||||||| || || || ||| Sbjct 147745 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 147804 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | || || ||| Sbjct 147805 TGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTC 147864 Query 199598 TTACCCGT 199605 || ||||| Sbjct 147865 TTGCCCGT 147872 Score = 111 bits (122), Expect = 4e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||||||||| |||||||| |||| |||||| || || | || Sbjct 147045 CGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTT 147104 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || || ||||| |||||||| ||||| || || || Sbjct 147105 CGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCC 147164 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| ||||| | | || || || | Sbjct 147165 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGG 147224 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 || || ||||| || ||||| || || |||| Sbjct 147225 GTAATGGTCTTGCCAGTGAGGGTCTTGACAA 147255 Score = 104 bits (114), Expect = 6e-17 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| |||||||| |||| |||||| || || | || | ||||| Sbjct 147337 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCC 147396 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| || | |||||||||||||| || || || ||| Sbjct 147397 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 147456 Query 199538 TGAATCTT--TTGCTT 199551 |||||||| |||||| Sbjct 147457 TGAATCTTGNTTGCTT 147472 >seq2 Length=1405217 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||| |||| ||||||||| || || | ||||| Sbjct 409110 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 409169 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| |||||||| ||||| ||| || || ||| Sbjct 409170 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 409229 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 409230 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 409289 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || ||||| || Sbjct 409290 TTCCCCGTGAGAGTCTTGACGAAAATCTG 409318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919983772169