Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq32 109 6e-19 seq20 107 2e-18 >seq2 Length=1405217 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || || | || |||||||| ||||| ||||||||| || ||||| | || || Sbjct 409112 CACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTC 409171 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| || || || | |||||||| || | || | || |||||||||| Sbjct 409172 GAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTG 409231 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| ||||| ||| | | | |||||| || ||||| || | ||||| || | Sbjct 409232 GATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCT 409290 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 | ||||| || || || || || || ||||| |||| Sbjct 409291 TCCCCGTGAGAGTCTTGACGAAAATCTGCATCTTGC 409326 >seq32 Length=2292469 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || |||||||||||||| || || | Sbjct 449923 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 449982 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | |||||||| || | || | || |||||||||| |||||| ||||| ||| | Sbjct 449983 TGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 450041 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | |||||||| ||||||||||| || || || Sbjct 450042 TCGATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 450101 Query 46583 AA 46584 || Sbjct 450102 AA 450103 >seq20 Length=1074596 Score = 107 bits (118), Expect = 2e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || ||||| | || || ||||||||||||||||| Sbjct 147705 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 147764 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||||| ||||| ||||| ||| Sbjct 147765 AATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 147823 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | ||||| || || || || | || ||||| |||||||||| Sbjct 147824 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 147874 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| ||||| ||||| || |||||| |||||||| |||| || Sbjct 146601 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTCC 146660 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | |||||||||||| | || | | |||||||||| | Sbjct 146661 AGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 146720 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | ||| | | | || ||||| || || || || | |||||||| || Sbjct 146721 ATCTTGGACTTCA-CGTTGTCGATGGTATCGCTTGACTCAACCTCAAGAGTGATGGTCTT 146779 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || || |||||||| Sbjct 146780 TCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || ||||| | || || ||||||||||||||||| Sbjct 147357 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 147416 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 ||||| ||||||||||| | || | || |||||||||| ||||| Sbjct 147417 AATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTT 147464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237643993640