Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq35 194 2e-44 seq20 125 7e-24 seq2 122 9e-23 seq32 114 1e-20 >seq35 Length=674057 Score = 194 bits (214), Expect = 2e-44 Identities = 550/833 (66%), Gaps = 33/833 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 115430 TTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 115371 Query 132685 GCTGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACT 132742 | | || ||| ||| || | | || ||||||| || | ||| || ||||||| Sbjct 115370 GAAGACTTATAGACCTTCTCGTTACCAAGAG--CGACGAGTAGTCGGTCAGCAACGAACT 115313 Query 132743 CGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCG 132801 | ||||| ||| |||| ||| ||| | || ||||| |||| ||||| || ||| Sbjct 115312 CAATGTACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGG-GCACAAGGCAGAGCCTCG 115254 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 || || || ||||||||| || || || || | ||| ||| || | | | | Sbjct 115253 GTAAGGAACTCCTGCTCGATGTTCACGGCATCAGTAATGATGTCCTGAATGACCTGCTTG 115194 Query 132862 CT----CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917 || ||||| ||| | || | | | ||||||||||||| || | || Sbjct 115193 CTGGCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCAAGCAAAGTCGGTGTGGAGACC 115138 Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 |||||| | || ||||| ||||| |||||||| || ||||| || ||||| || || Sbjct 115137 CTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCAGGCATAAGACCGCGCTTCTT 115078 Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037 |||||| || |||| ||||| ||| ||||| | |||||||| || ||||| || Sbjct 115077 GAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCCTCGACAGCAGCGAAGGC 115018 Query 133038 CACCAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 ||||| |||| | | || | | ||||| | ||| |||||| || | ||||| ||| Sbjct 115017 AACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG--GATCCATCGGATGGCCCAATCG 114960 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCC 133155 ||||| | | || || || || || ||||| || || | | | | || | | || Sbjct 114959 GCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATTGA--AGAGGTAGGTGCGCT--- 114905 Query 133156 GAGGAACGC------ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTC 133209 || ||| || | ||| |||||||| || ||| || | || || || | ||| Sbjct 114904 GA-GAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGTCTCAGAATGGATATTC 114846 Query 133210 TCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG 133269 ||||| ||| || || || || ||||| || ||||| | ||| || || | | Sbjct 114845 TCCATCATGATCTGGAATCCATAGAAGCATCGGGCCTCAGGGATCTGGACCTCGCCACTG 114786 Query 133270 AAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACG 133329 || ||||| || || || |||||||| ||||| || || || || ||||| || | | Sbjct 114785 AACCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCAAAGAAGGCAAGGATG 114726 Query 133330 TGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTG 133386 || || || |||||| | | | | ||| | ||| || | ||||| Sbjct 114725 TGAGAGACAAAGAACTGCTCGTCGGCAGTTAGGCGGTTGTTCCAATCATGAAGATCCTTA 114666 Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||||||| | ||||||| ||||||| || || |||||||| || |||||||| Sbjct 114665 GACAGGTCAATCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 114613 >seq20 Length=1074596 Score = 125 bits (138), Expect = 7e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||| || ||||||||| |||| || ||| | || Sbjct 147037 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCC 146978 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | || | ||||| || |||| ||||| ||||| |||||| | || | Sbjct 146977 GATACTATTGACAATG--TAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATC 146920 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || |||||||| || |||| || || |||| |||||||| Sbjct 146919 AGCAGCGACTTATCTTCGCCGGAAAACAGCTTGAGGACGGACGAACTCTCAGCGACTACA 146860 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || |||||| | || ||||| |||| ||||| Sbjct 146859 ACATTCAGAAGGAATCTACTCTGCACCTGGTCCTGCG 146823 Score = 105 bits (116), Expect = 7e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 |||||||| ||||| ||| |||| |||||| || | |||| | | | |||| | || Sbjct 147872 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAAGTC 147814 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| || ||| | ||||| ||||| | |||| ||| ||||| Sbjct 147813 CAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAA 147754 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | ||||||||| ||| ||||||||||| ||||| | || ||||| Sbjct 147753 GCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACTCTGCA 147694 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAA 38315 || || || ||||| ||||| ||||| ||| |||| |||||| || |||||| | | Sbjct 147253 GTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCGAC 147194 Query 38316 ACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATT 38375 | | || || || | ||||| ||||| || ||| | ||||||||||| || || Sbjct 147193 AATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGATC 147134 Query 38376 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | || ||||| || || || || | || |||||| ||| ||||||||||| ||||| Sbjct 147133 TTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGGA 147075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| | |||| ||| ||||| ||||| || Sbjct 147455 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAGCAGCTTGAG 147396 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || | ||||||||| ||| ||||||||||| ||||| | || ||||| Sbjct 147395 GATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACTCTGCA 147346 >seq2 Length=1405217 Score = 122 bits (134), Expect = 9e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 409324 AAGATGCAGATTTTCGTCAAGACTCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 409265 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 409264 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 409206 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 409205 TCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 409146 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || | ||||| || Sbjct 409145 CAACATCCAGAAGGAGAGC-ACCCTCCACCTCGTGCTCCG 409107 >seq32 Length=2292469 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 450103 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACTATC 450044 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | || || ||||| || Sbjct 450043 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAGCGACT 449985 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 ||| | || ||||| ||||| || || | || |||||| ||||||||||||||| || Sbjct 449984 CATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAA 449925 Query 38432 GG 38433 || Sbjct 449924 GG 449923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172131018880