Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq16 320 2e-82 seq97 141 1e-28 seq39 82.4 1e-10 >seq16 Length=1247471 Score = 320 bits (354), Expect = 2e-82 Identities = 994/1534 (65%), Gaps = 37/1534 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || || || || || || Sbjct 335098 TCATCCTCCTCCTTGTACTTCTCAGCGTCAGAAAGCATGCGCTCGATCTCCTCCTTGGAC 335157 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| || || ||||| | ||| || || | | |||| || | Sbjct 335158 AGGCGACCCTTGTCATTGGTGATGACGATCTTGTTGGACTTGCCGGTGCCCTTCTCGACG 335217 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 335218 GCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATCTGGGGGACA 335277 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | |||| ||| | Sbjct 335278 CCACGGGGGGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATCAGGTTGTTGTCCTTG 335337 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || ||| ||||| || ||||| | || || |||| || || || Sbjct 335338 GTGCGCTGACGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCAGAGAAG 335397 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 335398 GTGGAGAAGACCTCAGACTTCTTGGTAGGGATAGTGGTGTTGCGGGGGATGAGCTTGGTC 335457 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || |||| || || || ||||| | || || ||| | |||| Sbjct 335458 ATCATACCACCAGCGGTCTCGATACCGAGGGAGAGAGGGGCGACATC---GAGAAGCAGG 335514 Query 6989 -TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACC 7036 ||| | || || |||| | || | | |||||||| ||||| Sbjct 335515 ATCTCG------TTGGTAGCCTTGGAGGAAGTGTCTCCGGACAGAATGGCGGCCTGGACG 335568 Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096 | || ||||| || || |||||||| ||||| || | || || | || || ||||| Sbjct 335569 GCGGCACCGTAGGCAACAGCCTCATCAGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTG 335628 Query 7097 AAATAATCCG--ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAA 7154 || || || | |||| || || | ||||| || || || || ||||| | | Sbjct 335629 AAGTAGTCGGTGATAAGCTTC--TGGACACGGGGGATACGGGTGGAACCGCCGACAAGGA 335686 Query 7155 CGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT 7214 |||| || | || || || |||||||| | ||| || ||||| || | Sbjct 335687 CGATCTCGTGGACGAGAGACTTGTCGATCTTGGCGTCAGTGAGGACACGGTCGACGGGCT 335746 Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274 || ||||| | ||| || ||||||||||| || || ||||| || || | Sbjct 335747 GGATGGTGGATCGGAAAAGATCCTGGCAGAGTTCCTCAAATCGGGCTCGGGTGATAGAGG 335806 Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334 | ||||| |||| ||| ||| | | || ||||| || || | || || || | || | Sbjct 335807 TGTAGAAGTCAATGCCCTCGAACAGAGAGTCAATCTCGATAGAGGTCTGGGCAGAGGAGG 335866 Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC 7394 | | |||||||| || ||||| || || ||||| | ||| || || || || ||| Sbjct 335867 AAAGAGTTCGCTTGGCACGCTCGCAAGCAGTTCGGAGACGTCGCAGAGCGCGAACGTTGG 335926 Query 7395 CGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCG 7454 ||||| |||||||| || || | ||| || || | |||||| | || | Sbjct 335927 AGGAAAGGTCTTTCTTGTGCTTCCTTTTGAATTCGTTTACGAAGTGGTTGACCAGACGGT 335986 Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 ||||| || |||||||||||||| || || || ||||| | ||||| || ||||||| Sbjct 335987 TGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATAC 336046 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | | || ||| | | | || |||||||| ||||||||||| || || || ||||| | Sbjct 336047 CCTCCTCGATGGTCAGGAGAGACACATCAAAAGTACCACCACCAAGATCGAAGATGAGGA 336106 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 |||| || | || ||||| || |||||||| ||||| || || || || || | Sbjct 336107 CGTTGCGCTCACCCTCGACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCGGTAGGCT 336166 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || ||||| || ||| ||| |||||||| || | ||||| || || || || | Sbjct 336167 CGTTGATAATTCGGAGAACGTTGAGGCCAGCGATGAGACCGGCATCCTTGGTAGCCTGAC 336226 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| || || || || || |||| |||| ||| ||| | Sbjct 336227 GCTGAGAGTCGTTGAAGTAGGCGGGAACAGTGACAACGGCGTTGTTGACAGTCTCACCAA 336286 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | || || || ||| | ||| ||| ||||| || ||||| || || ||||| || | | Sbjct 336287 GGTAAGACTCGGCGGTCTCTCGCATCTTGGTGAGGACCATGGAGGAGATCTCCTCGGGAG 336346 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC-- 7872 || ||| || || || || || || || || ||||| || || |||| Sbjct 336347 TGAAGGTCTTCTGCTCGCCCTTGAACTCGACCTCGATGATGGGCTT----GC--CACCCT 336400 Query 7873 -GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | || | ||| | | | | ||||| ||| | ||||||| || | ||||| Sbjct 336401 TGTCAATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGGCAAACT 336460 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| | ||||| || || || || ||||| | ||||||||||| |||| Sbjct 336461 TGCGACCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGAGGGTTCATGGCGACCTGGT 336520 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || || || ||||| ||||| || | || || || ||||| | || || | Sbjct 336521 TCTTGGCGGCATCACCGATCAGACGCTC---GGTGTCGGTGAAACCGACGAAAGAGGGAG 336577 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 | ||||| || || |||||||| || ||||| || Sbjct 336578 TGGTTCGGTTACCCTGGTCGTTGGCGATAATATC 336611 >seq97 Length=1508482 Score = 141 bits (156), Expect = 1e-28 Identities = 358/540 (66%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| |||| | ||| || | || ||| | | || ||| Sbjct 143733 TCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCATCGAAGAGAGAGTCA 143674 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || ||||| | || || ||| | || ||||| || ||||| || || ||| Sbjct 143673 ATCTCGATGGTGGCCTGAGCACCGCTAGACAGGGTACGCTTGGCACGCTCGCAAGCAGTT 143614 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| || || ||||| | | || || | || ||||| || || ||| Sbjct 143613 CGGAGACGTCGGAGAGCACGGGCATCGCCAGACAGGTCCTTCTTGCTCTTGCGGGAGAAC 143554 Query 7427 TCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 || | | |||| |||| |||| | | ||||| || | |||||||||||| || || Sbjct 143553 TCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGGGTGTC 143495 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || ||||| || ||||| |||| ||| || | ||||| | | || ||||| || Sbjct 143494 ACCAGCGGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTAAGGAGGGACACATCGAA 143435 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG-- 7603 ||||||||||| || || | ||||| ||||| || | ||| | ||| || Sbjct 143434 AGTACCACCACCAAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTGCCGGA 143378 Query 7604 ----AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 |||||||| ||||| || || || || || || || || ||||| || ||| || Sbjct 143377 GCCAAGACCGTAGGCGATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGGACGTTAAG 143318 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 || || || | | || || || || || ||||| || ||||| |||||||| || Sbjct 143317 ACCGGCGATGGAACCGGCGTCCTTGGTGGCCTGTCGCTGGTTGTCGTTGAAGTAGGCAGG 143258 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || | ||| || | | ||| ||||| ||||| | | || || || || ||||| Sbjct 143257 GACAGTAATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCCTTCAT 143198 >seq39 Length=586465 Score = 82.4 bits (90), Expect = 1e-10 Identities = 166/243 (68%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| || ||| || ||||| || Sbjct 424638 TCGAAATCCTCACCACCAAGGTGGGTGTCACCGGCGGTGGCCAGGACCTCGAAGATGCCG 424697 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || |||||||| ||||||||||| || || | || | | Sbjct 424698 TCGTCGATGGACAGGAGAGAGACATCAAAGGTACCACCACCGAGATCGTA---GACAATG 424754 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | ||| ||| | | |||| || | |||||||||||||| || || || || || Sbjct 424755 ATC-TGTCGCTCGCCGTCAGTCTTGTCCAAGCCGTACGCGATAGCGGCGGCGGTGGGCTC 424813 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | || || || ||| || || |||||| | | || || || || || ||||| Sbjct 424814 GTTGACGATTCGGAGGACGTTGAGACCGGCAATAATACCGGCGTCCTTGGTGGCCTGTCG 424873 Query 7696 TTG 7698 || Sbjct 424874 CTG 424876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131950509880