Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq20 149 1e-30 seq2 138 3e-27 seq32 116 8e-21 >seq20 Length=1074596 Score = 149 bits (164), Expect = 1e-30 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || || || ||||||||||| || || | ||||| || Sbjct 147688 ACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCA 147747 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || ||||| || || ||||| || ||||| ||| Sbjct 147748 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 147807 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || ||||||||||| || || || ||||||| ||||| Sbjct 147808 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTG 147867 Query 195112 CCTGTCA 195118 || |||| Sbjct 147868 CCCGTCA 147874 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || || || ||||||||||| || |||| ||||| ||| Sbjct 147057 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTCG 147116 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| || || |||||||| || || ||||| || ||||| ||| Sbjct 147117 AGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGA 147176 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||| || || || || ||||||| ||||| Sbjct 147177 ATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTG 147236 Query 195112 CCTGT 195116 || || Sbjct 147237 CCAGT 147241 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||| || || || || || || || ||| ||||| | || || || Sbjct 146600 AACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTC 146659 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || |||||||| || || ||||| |||||||| || || ||||| || Sbjct 146660 CAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 146719 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 || || ||| ||||| || ||||| || ||| || || ||||| || | || Sbjct 146720 GATCTTGGACTTCACGTTGTCGATGGTATC---GCTTGACTCAACCTCAAGAGTGATGGT 146776 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| || || ||||| | |||||| Sbjct 146777 CTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || ||||| ||||| || || || ||||| ||||| ||| ||||||| Sbjct 146820 AGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGT 146879 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || ||||| || || |||||||||||||| || || || || |||||||| || Sbjct 146880 CCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGAATGCCCTCC 146939 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||| || || ||||| || || || || || || ||||| Sbjct 146940 TTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACCTCGAGGGTG 146999 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| || | ||| || || || | ||||| Sbjct 147000 ATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 113 bits (124), Expect = 1e-19 Identities = 106/134 (79%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || || || ||||||||||| || || | ||||| || Sbjct 147340 ACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCA 147399 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || ||||| || || ||||| || ||||| ||| Sbjct 147400 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 147459 Query 195052 ATTTT--TTGCTTG 195063 || || ||||||| Sbjct 147460 ATCTTGNTTGCTTG 147473 >seq2 Length=1405217 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| ||| || || | ||||| ||| Sbjct 409113 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 409172 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || || || || |||||||| || ||||| || Sbjct 409173 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGG 409232 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| |||||||| | |||||| Sbjct 409233 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 409292 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | ||||| Sbjct 409293 CCCGTGAGAGTCTTGACGAAAATCTGCAT 409321 >seq32 Length=2292469 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || |||| ||||| ||||||||||| || || ||||| Sbjct 449925 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATG 449984 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| || || || || |||||||| || ||||| || || || ||||||||| || Sbjct 449985 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 450044 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 450045 ATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 450103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480078970069