Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20 118 7e-22 seq2 91.5 1e-13 seq32 89.7 3e-13 >seq20 Length=1074596 Score = 118 bits (130), Expect = 7e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || ||||| | || || |||||||||||||| || Sbjct 146846 TTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAA 146905 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || ||||| ||||| || | || | ||||||||||| |||||| || || Sbjct 146906 GATAAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACATT 146965 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | ||| || |||| ||| ||||| ||||||||||||||||| || Sbjct 146966 GTCAATAGTATCGGATGACTCTACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGAC 147025 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 147026 AAAGATCTGCATA 147038 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||||| || ||| ||||| ||||||||||| || | || | || || Sbjct 146600 AACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTC 146659 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 146660 CAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 146719 Query 34892 AATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| || ||| |||| ||||| || | |||||| || | || ||| Sbjct 146720 GATCTTGGACTTCACGTTGTCGATGGTATCGCTT-----GACTCAACCTCAAGAGTGATG 146774 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || | ||||| || || || |||||| Sbjct 146775 GTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCATA 146810 >seq2 Length=1405217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| ||| | || |||| || ||||| || || Sbjct 409125 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 409184 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || ||||| ||||| || | || | ||||||||||| ||||| ||| Sbjct 409185 GCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 409244 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | || | || | ||| || || | ||| || || || |||||||||||| Sbjct 409245 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGAGTC 409304 Query 34965 TTCACAAAGATCTGCATATT 34984 || || || |||||||| || Sbjct 409305 TTGACGAAAATCTGCATCTT 409324 >seq32 Length=2292469 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| |||| |||| || ||||| || || ||||| || Sbjct 449925 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATG 449984 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| ||||| || | || | ||||||||||| ||||| |||||| | Sbjct 449985 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 450044 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | || || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 450045 ATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 450103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633176657496