Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq30 363 3e-95 seq35 214 3e-50 >seq30 Length=762562 Score = 363 bits (402), Expect = 3e-95 Identities = 1008/1523 (66%), Gaps = 37/1523 (2%) Strand=Plus/Plus Query 212894 CTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAA 212953 ||||| ||| ||||| || | |||||| ||||| | || || | | |||||| | Sbjct 621513 CTTGAGCAGCCAGGGGTTCACGACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAGAT 621572 Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| |||||||| ||||| | || |||||| || ||||| ||||| | || ||||| || Sbjct 621573 GTTGGAAGTGTAAGGCTCAAAGCACTCGTTATTGCCCAGGATCTGCGAGGTACTGGCAGT 621632 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG-CGCCGAA 213072 ||||||||| || | || | |||||| | | ||||| || || | | | || Sbjct 621633 GGGCATGGGTGCAAGGAGCAAACTGTTGCGGATACCGTGTTCCTTGACCTGCTCTCTGAG 621692 Query 213073 GCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACT 213132 ||| |||||||||| ||||| | ||||||||||||||| || |||| Sbjct 621693 AGTCT-CCCAGTCCCAA---------AGGTCGGAGGGCTTCACGTTCCACATATCGAACT 621742 Query 213133 GCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 | | ||| || | | | ||| ||||| | | | ||||||||| || | |||||| | Sbjct 621743 GGAGGATACCCTCGGAAGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTAG 621802 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| || || || ||||||| |||||||| ||||| |||| | ||||| Sbjct 621803 CCAGCT-GCACCGAGGCAGTGAGAGCAGCGTGATAGATGGTCTCAAAAATCTGCTTGTTG 621861 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 621862 AGCTCACGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCCGCAAGA 621921 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAG 213371 |||||||| || | ||||| |||| ||| | || ||| ||| | ||| | Sbjct 621922 CCCTGGACGCCAACACCGATAGGTCGGTGACGCATGTTGCTGTTGCGGGCCTCAGGGACA 621981 Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 || || ||| || |||||| ||||||| ||||| | | || | |||||| | | Sbjct 621982 GGATAGTGGTTCACATCAATGATCCTGTTGAGATTGCGAACGACAACCTGGGTGACCTTG 622041 Query 213432 GCCAGGTACTC---GTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCG 213488 ||| | ||| || || | | | | | ||| | | || ||||| ||| Sbjct 622042 TGCAGCTTCTCGAAGTCATAGCAGGCTT---CATCGTAGTTGATGTACGAGGGCAGAGCG 622098 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTG 213548 | | ||||||||||| || || ||||| | || | | |||||| || ||||| ||| Sbjct 622099 AGGGATGCCAGGTTGCACACAGCAACCTCATCAGGGGCACAGTACTCAATAATCTCAGTG 622158 Query 213549 CACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAG- 213606 |||| |||| || ||| ||||| |||||||||| ||||| ||| ||||| | |||| Sbjct 622159 CACAAGTTGGAGCTTCGAATGGTACCCAGGTTCTTCTGGTT--ACTCTTGCGGTTGCAGT 622216 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCC 213666 ||||||||||||||| ||||| || ||||| ||| | | | || || || Sbjct 622217 GGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCCTCAAGAATAGCATACC 622276 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGT 213726 |||| | | ||||||| | | ||| | | || | |||||||| || | Sbjct 622277 AGAGCTTCTGAGCCTTGATGGTCTTGC-GACCCTTGCCAGCCT--GCTCGTACTTCTCAT 622333 Query 213727 AGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA-GGATGCGGGACAC 213785 | || | | || || | ||| || | | || || || || || ||| ||| Sbjct 622334 ACAGAGCCTCAAACTCATCGCCGTAGCAGTCGGCAAGACCGGGGCACTCATTAGGG-CAC 622392 Query 213786 ATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAG 213844 |||||| ||||||| ||| || |||| || | || |||||| || || |||| ||| || Sbjct 622393 ATGAGGGTCCAGTCGCCGTTCTTCTC-AACACGCTTCATGAAGAGATCGGGGATCCAGAG 622451 Query 213845 CGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAG 213904 || ||||||||| | | | ||| ||| || ||| |||||||| || || Sbjct 622452 AGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 622511 Query 213905 AAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCT 213961 || ||||||| |||| |||||| ||||| | |||||| || ||||| || | || | Sbjct 622512 GAACTCAAAGACATCCGAGTGCCAGGGCTCAAGGTAGATAGCGAAGGCACCAGGTCGCTT 622571 Query 213962 CTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAG 214021 ||||| |||||||| || | ||| ||||||||| || || | ||| | Sbjct 622572 GTTGCCACCCTGGTCAACATATCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGGGTGAC 622631 Query 214022 CCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCAT 214081 |||||||| |||||||| || || || || ||||||| ||| | | | | || Sbjct 622632 GCCGTTGGAAGTACCGTTGGTACCGGCGATGTAGGAGCCGGTGGCACGGATGCGGTGCAC 622691 Query 214082 GGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCAT 214141 | || || |||||||| || |||||| |||||||| ||| | | | ||| || Sbjct 622692 GTTCAGACCAATGCCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATA 622751 Query 214142 GATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCT 214201 ||| || | |||||||| || | | || | || |||||| || ||||||||| Sbjct 622752 GATACCCTCAATGCTGTCCTCCTTCATGTCAACCAGGAAGCATGAAGACAGCTGGGGCTG 622811 Query 214202 GGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | ||||| ||||| || |||||| ||| ||| | | |||||| | || | ||| Sbjct 622812 AGGAGTGCCAGCATTGAATAGAGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGACATGAG 622871 Query 214262 CCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAG-CGCACCTCA 214320 |||| ||||| ||||| || |||| ||| | || | || | || Sbjct 622872 GTTGTATGTCTCAAGGACACGCTCAATATCGTCACCCCAGATGCCAACAGACACA-CGCA 622930 Query 214321 TCAGCATGTGCTGGGGCCTCTCTATGGGTCCT-TTGGGGCCCTTGAGCAGGTAGGAGCGC 214379 | | ||||||||| || | ||| | || | || |||||| ||||| || ||| Sbjct 622931 TGATCATGTGCTGAGGGCGCTCGA-CAATCTTGTTATCAATCTTGAGGAGGTATGATCGC 622989 Query 214380 TCCAGAGTCTTGAACCCAAAGTA 214402 |||||||||||||| |||||||| Sbjct 622990 TCCAGAGTCTTGAAGCCAAAGTA 623012 >seq35 Length=674057 Score = 214 bits (236), Expect = 3e-50 Identities = 488/727 (67%), Gaps = 7/727 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 115449 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTC 115390 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||||||||||| | ||||| ||| | || ||| | | || | Sbjct 115389 CATGAAGTCGAAGGGGTTGGAAGACTTATAGACCT-TCTCGTTACCAAGAGCGACGAGTA 115331 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || ||| |||| ||||| | ||||||| | |||||||| | |||| Sbjct 115330 GTCGGTCAGCAACGAACTCAATGTACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGGG 115271 Query 48018 ACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| |||| ||||| || || ||||||| ||| || | |||||| || | || Sbjct 115270 -CACAAGGCAGAGCCTCGGTAAGGAACTCCTGCTCGATGTTCACGGCATCAGTAATGATG 115212 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || || | || || || | || | | | | || | ||| | ||| ||| Sbjct 115211 TCCTGAATGACCTGCT-TGCTGGCACG--GCCCTTGAGGTGGGAGTGGAGGAGGCAAGCA 115155 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| |||| | || ||||| || ||||||| |||| ||||| ||||||||| Sbjct 115154 AAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCAGGC 115095 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || ||||||||||| || | ||||| | ||| |||||| || ||| Sbjct 115094 ATAAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCC 115035 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || ||||| || || | || | || |||| ||||||||| |||||| Sbjct 115034 TCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCAT 114975 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC 48376 | ||||| || |||||||| ||| || || || ||||| || || |||||| Sbjct 114974 CGGATGGCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATTGAAGAGG 114915 Query 48377 TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAG 48436 | ||| || | | ||| | || || || ||| | ||| ||||||| Sbjct 114914 TAGGTGCGCTGAGAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGTCTCAGAA 114855 Query 48437 TGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACT 48496 || | |||||| || ||||||||| || |||||| | ||||||| | ||| || Sbjct 114854 TGGATATTCTCCATCATGATCTGGAATCCATAGAAGCATCGGGCCTCAGGGATCTGGACC 114795 Query 48497 TCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAG 48556 || ||| | ||| | || ||||| ||||| || ||||| ||||||||||||||| Sbjct 114794 TCGCCACTGAACCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCAAAGAAG 114735 Query 48557 GCAAGGA 48563 ||||||| Sbjct 114734 GCAAGGA 114728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531554074880