Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq35 141 3e-28 seq97 125 2e-23 seq65 98.7 3e-15 seq16 98.7 3e-15 >seq35 Length=674057 Score = 141 bits (156), Expect = 3e-28 Identities = 248/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 || ||||| ||| ||||| | ||||| |||||| |||||||||||| || || Sbjct 114808 GAGGCCCGATGCTTCTATGGATTCCAGATCATGATGGAGAATATCCATTCTGAGACCTAC 114867 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTC-CAGAAGCA-CAAACTATTCAACG 133424 || || || || ||||||||||| || || || ||| ||| | | || ||||| | Sbjct 114868 TCGCTGCTTATCGACACTTACATCAAGGA-GCCTTCTCAG-CGCACCTACCTCTTCAATG 114925 Query 133425 CCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 | | | | || | || ||||| |||||| | || ||||| || |||||||||| Sbjct 114926 CTA-TCGAGACCATCCCCTGTATCCGAAAGAAGGCCGATTGGGCCATCCGATGGATCCAG 114984 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| | ||||| ||||| ||||| || |||| || ||||| ||||| Sbjct 114985 GACAAGAACTCTTCCTTTGCCCAGCGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTC 115044 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||| || || ||| || || || ||||| || ||||| ||| || | ||||| ||| Sbjct 115045 TTCAGCGGCGCCTTCGCTTCCATCTTCTGGCTCAAGAAGCGCGGTCTTATGCCTGGTCTG 115104 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||| |||||||| || || || | ||||||| || |||||||| ||||| Sbjct 115105 ACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGC 115157 >seq97 Length=1508482 Score = 125 bits (138), Expect = 2e-23 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||| | | || ||||| || ||||| ||| || || || || || Sbjct 167146 TCTTCCAGAGCCTTAACCAGCCGTCGCTGGATGTAACCTGTTTCAGCAGTCTTAACTGCG 167205 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| | || ||| |||| || |||||||| | ||| || || Sbjct 167206 GTATCAATAAGACCTTCTCGGCCAGCCATGGCGTGGAAGAAGAACTCAGTAGGAGTGAGA 167265 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | | ||| |||| ||||| ||||| || ||||| || | |||| ||||| Sbjct 167266 CCACGGAGATATGAGTTCTCGACGAAGCCACGGGCTTCGGGAGAGTAGTCGTCTTTGGTG 167325 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || ||||| || | || || | ||| | ||||||||||| || || ||| ||||| Sbjct 167326 AAATGGGGCAGTGTGCGGTACTTGAAACCGAAGGGGATACGCTTGCCTTCGACGATCTGC 167385 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||||| || | |||||||||| || || Sbjct 167386 TGTCCCACAAGCGCAGTCATCTGCGAGATGTT 167417 >seq65 Length=1864066 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | || | || || Sbjct 1170258 ATGAGTCCACAAATCTCGCAGACGTGGACTCGGAAAGCATCCGACACTTCGAACAGACGT 1170199 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | ||| ||||| | ||||||||||||||| |||||||| ||||| Sbjct 1170198 TCCTTAAGGAAGGCCGCTGCTCCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAT 1170139 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| ||||| | ||| || ||||||| || || Sbjct 1170138 CGCAGACCACCATCTCGAGCACGACCTTCCACAGGCTGCCGGGT 1170095 >seq16 Length=1247471 Score = 98.7 bits (108), Expect = 3e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 251480 GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCAT 251539 |||| || |||| | ||| | |||||| || ||||||||||| | || |||||||||| Sbjct 356035 GAGAGGCGCCGTAAGCAATTAGACAATCGCGTTCCATTTCACCTAGGCGCAGACCACCAT 356094 Query 251540 CGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGC 251599 | || | | ||| || | |||||||| || ||| | | ||| || |||| ||| Sbjct 356095 CTCGGGAACGACCTTCCGTGGGCTGACGGGTCAGAATGGCTCGAGGTCCCCTGGATCGGG 356154 Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 ||| |||||| | ||||| |||||||| ||||||||| | || ||| |||||| Sbjct 356155 AATGCATCTTATCTTGCACCATGTGCTTGAGGCGCTGGTAGTAAATCGGTCCGTTGAAGA 356214 Query 251660 TG 251661 || Sbjct 356215 TG 356216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815582230059