Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq30 136 5e-26 seq43 127 2e-23 seq35 120 4e-21 seq32 111 2e-18 >seq30 Length=762562 Score = 136 bits (150), Expect = 5e-26 Identities = 218/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| ||||| ||||||||||| || ||||||||| Sbjct 622581 CTGGTCAACATATCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGGGTGACGCCGTTGGA 622640 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||||| ||||| ||| || | |||| || | || Sbjct 622641 AGTACCGTTGGTACCGGCGATGTAGGAGCCGGTGGCACGGATGCGGTGCACGTTCAGACC 622700 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| |||||| || | || || ||||| || || ||||| ||||| Sbjct 622701 AATGCCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAGATACCCTC 622760 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || || ||||| || || || || || | ||||| Sbjct 622761 AATGCTGTCCTCCTTCATGTCAACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTGCC 622820 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| || ||||| | || |||||| |||| | ||||||| || ||| || Sbjct 622821 AGCATTGAATAGAGTGGGGGAGGCGTGGGTGAAGAACTTGCTCGACATGAGGTTGTATGT 622880 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 622881 CTCAAGGACACGC 622893 >seq43 Length=2177010 Score = 127 bits (140), Expect = 2e-23 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| || |||||||| || || || |||| |||||| |||| |||||||||| Sbjct 83908 CCAACTACCTTGATATCAAGCCCCTTCTGGACGTTGGCTGCAAGACTGTTGCCAACATGA 83849 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 83848 TCAAGGGCAAGTCCCCCGAGGAGATCCGTAAGACGTTTAACAT 83806 >seq35 Length=674057 Score = 120 bits (132), Expect = 4e-21 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| || || || ||| |||||| |||||||||||||| |||| ||||| |||||| Sbjct 115446 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 115387 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACGCGAGCAGG 868816 | ||| ||||||| | ||| ||| ||| ||| || |||||| |||| || Sbjct 115386 GAAGTCGAAGGGGTTGGAAGACTTATAGACCTTCTCGTTACCAAGAGCGA--CGAGTAGT 115329 Query 868817 CGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCC 868876 ||||| || || ||||| |||||||| ||||||| |||| |||||||||| || || Sbjct 115328 CGGTCAGCAACGAACTCAATGTACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGGGCA 115269 Query 868877 ACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 ||||| | |||| | | ||||| | |||||| | ||||| || Sbjct 115268 CAAGGCAGAGCCTCGGTAAGGAACTCCTGCTCGATGTTCACGGCATC 115222 Score = 93.3 bits (102), Expect = 5e-13 Identities = 199/290 (69%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTT-GCTAAAGGCGAGGCCGGGCATGAGGCCGCGCT 869237 ||| ||||| ||| ||| | ||||| | |||| | || || ||||| || ||||||| Sbjct 115140 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTC-AGACCAGGCATAAGACCGCGCT 115082 Query 869238 TCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||||||||| ||||||| ||| ||| ||| || || |||||||| || || | Sbjct 115081 TCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCCTCGACAGCAGCGA 115022 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354 || | | || |||| ||||||| | ||| | |||| | |||||| || | Sbjct 115021 AGGCAACCAGACGCTGGGCAAAG--GAAGAG----TTCTTGTCCTGGATCCATCGGATGG 114968 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413 |||| |||||||| || | | | || | || ||||| || ||||||| ||| | Sbjct 114967 CCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATTGAAGAGGTAGGTGC 114908 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | || ||||||| || |||||||| || ||||| |||||||| Sbjct 114907 -GCTGAGAAGGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGTCTC 114859 >seq32 Length=2292469 Score = 111 bits (122), Expect = 2e-18 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||||||||| |||| |||||||||||| | ||||| | | Sbjct 1643670 GGCGAGTCGCACGGCAAATCCGTCTCATGCATCATCGACAACTGCCCGCCCAACCTCAGC 1643729 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 ||| ||||||||||||||||||| ||| | | || ||| | || |||||| || | Sbjct 1643730 CTGACCGAGGCCGACATCCAGCCCCAGCTCAACCGCCGCAGGCCCGGCCAGTCGGCCATC 1643789 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | |||||||||||||| || ||||||| |||||| || ||||| ||||||||| || Sbjct 1643790 ACGACGCCGCGCAACGAAAAGGACCGCGTCACCATCCACTCAGGCACCGAGAACGGCGTC 1643849 Query 18280 ACGCTCGGC 18288 || |||||| Sbjct 1643850 ACCCTCGGC 1643858 Score = 86.0 bits (94), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 18307 GTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG---TG---CCG 18360 ||| ||||| |||||||||||| ||||| ||||| | || | || ||| Sbjct 1643938 GTGCCCAACGAGGACCAGCGGCCCAAGGACTACGGCGACAAGACCATCGACCTGTATCCG 1643997 Query 18361 CGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGC 18420 || || || ||||||| |||||| | | ||||||||| ||||||| ||||| ||| Sbjct 1643998 CGCCCTAGCCATGCCGACTGGACCTACCTCGAGAAGTACGGCGTCAAGGCCTCGTCCGGC 1644057 Query 18421 GGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAG 18480 || ||||| || || || ||||| | ||||||||||| || || || || ||| Sbjct 1644058 GGTGGCCGCAGTTCCGCTCGTGAGACGATTGCCCGCGTCGCCGCTGGTGCTGTTGCTGAG 1644117 Query 18481 AAATGGCTC 18489 || |||||| Sbjct 1644118 AAGTGGCTC 1644126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130419078919