Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq20 120 3e-22 seq30 105 6e-18 >seq20 Length=1074596 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| ||||| | || Sbjct 147037 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCC 146978 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| |||||||| ||||| || || || || || ||||| Sbjct 146977 GATACTATTGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 146918 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || || | ||||| ||||| |||||||| ||||| || ||| | ||| || || | Sbjct 146917 CAGCGACTTATCTTCGCCGGAAAACAGCTTGAGGA-CGGACGAAC-TCTCAGCGACTACA 146860 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||| |||||||| || || ||| |||| ||||| |||| || || Sbjct 146859 ACATTCAGAAGGAATCTACTCTGCACCTGGTCCTGCGACTGCGTGGTGG 146811 >seq30 Length=762562 Score = 105 bits (116), Expect = 6e-18 Identities = 422/657 (64%), Gaps = 22/657 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGA-TCACGAATATGTCGCGGTATTGTTGCAATATTTTG 138416 ||||||||||| |||||||| ||| | || | | | || || ||| || || || Sbjct 621385 ATCTCCCACACAGTCTTGTACAGAGCCTTGACTTCGGC-AGGGATGTTTGGGATGTTCTG 621443 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 ||| ||||| | |||||||| || || ||||| |||| ||| | || | Sbjct 621444 GATGGAGCCGTTCTCGGCAATGATTCGGTTCTTCATGGCATCCGACCACAAACCCATGTC 621503 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 || | || || | ||| | ||| | |||||| || ||||| || | ||||| || Sbjct 621504 GACGAGATCCTTGAGCAGCCAGGGGTTCACGACCTGGAACTCACCAGCAAGGACTCGGCG 621563 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 ||| |||||| ||| |||||||||| | ||||| || ||||| ||||| | || Sbjct 621564 CTGGTAGATGTTGGAAGTGTAAGGCTCAAAGCACTCGTTATTGCCCAGGATCTGCGAGGT 621623 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | || || |||||| || | | | | || || | |||||| ||||| | Sbjct 621624 ACTGGCAGTGGGCATGGGTGCAAGGAGCAAACTGTTGCGGATACCGTGTTCCTTGACCTG 621683 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 || |||| | | ||||||||| | ||| || || ||||||||||||| |||| Sbjct 621684 CTCTCTGAGAGTCTCCCAGTCCCAAAGGTCGGAGGGCTTCACGTTCCACATATCGAACTG 621743 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 | || ||| || || ||| | | | | ||| ||| ||| | || Sbjct 621744 GAGGATACCCTCGGAAGCAGGGGAGCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTAGC 621803 Query 138777 CAACTCGTTGCTC----GCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGAT 138832 || | ||| | || ||| ||| | | || || || || |||||||| | Sbjct 621804 CA----GCTGCACCGAGGCAGTGAGAGCAGCGTGATAGATGGTCTCAAAAATCTGCTTGT 621859 Query 138833 TGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCG--GAGCATCGTGAACGCGTCGGC 138890 ||||| || ||||| | |||| | |||||||| ||||| ||| || || || Sbjct 621860 TGAGCTCACGAGCCTCAGGAGACTCGAAGGGCATGCGCAGAGCA--AGGAAAGCATCCGC 621917 Query 138891 CAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGC-GGCTT 138949 || || || ||||| || |||| ||| || || |||| || ||| |||| ||| | Sbjct 621918 AAGACCCTGGACGCCAACACCGATAGGTCGGTGACGCA----TGTTGCTGTTGCGGGCCT 621973 Query 138950 C---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCT 139003 | || |||||| | ||| ||||| ||||| |||| | ||| || ||||| |||| Sbjct 621974 CAGGGACAGGATAGTGGTTCACATCAATGATCCTGTTGAGATTGCGAACGACAACCT 622030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896998261960