Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq35 136 6e-26 seq30 118 2e-20 seq43 114 2e-19 seq59 95.1 2e-13 >seq35 Length=674057 Score = 136 bits (150), Expect = 6e-26 Identities = 234/333 (70%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | ||||| | |||| |||| || ||||| || |||||| Sbjct 115140 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA--CCAGGCATAAGACCGCGC 115083 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 ||||||||||| ||||||| | ||| ||| ||| || || |||||||| || || Sbjct 115082 TTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCCTCGACAGCAGCG 115023 Query 794458 AAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCATC 794514 ||| | || || |||| |||||| || || | | ||| |||||| || Sbjct 115022 AAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCATCGGATG 114969 Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 794573 ||||| || ||||| || | | |||| | || ||||| || ||||||| ||| Sbjct 114968 GCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATTGAAGAGGTAGGTG 114909 Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 | || || ||||||| ||| |||||||| || |||||||||||||| || ||||| Sbjct 114908 CGCTGAGAA-GGCTCCTTGATGTAAGTGTCGATAAGCAGCGAGTAGGTCTCAGAATGGAT 114850 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || ||||||||| ||||| ||||| Sbjct 114849 ATTCTCCATCATGATCTGGAATCCATAGAAGCA 114817 Score = 122 bits (134), Expect = 1e-21 Identities = 169/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| |||||||||||||| |||| ||||| |||||| Sbjct 115445 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 115386 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | ||| ||||||| | | ||| ||||||| || |||||||| || || | Sbjct 115385 AAGTCGAAGGGGTTGGAAGACTTATAGACCTTCTCGTTACCAAGAGCGACG--AGTAGTC 115328 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 |||| || ||||| ||||||||||| ||||||| |||| |||||||||| || || Sbjct 115327 GGTCAGCAACGAACTCAATGTACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGGGCAC 115268 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||||| | |||| | | ||||| | |||||| | ||||| || | ||||| Sbjct 115267 AAGGCAGAGCCTCGGTAAGGAACTCCTGCTCGATGTTCACGGCATCAGTAATGAT 115213 >seq30 Length=762562 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| || || |||| ||| ||||| ||||||||||| | ||||||||| Sbjct 622581 CTGGTCAACATATCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGGGTGACGCCGTTGGA 622640 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | ||| || | |||| || | || Sbjct 622641 AGTACCGTTGGTACCGGCGATGTAGGAGCCGGTGGCACGGATGCGGTGCACGTTCAGACC 622700 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| |||||| || | || || | || || || || ||||| ||||| Sbjct 622701 AATGCCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAGATACCCTC 622760 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||| |||||||||| | ||| ||||| || || || || | | ||||| Sbjct 622761 AATGCTGTCCTCCTTCATGTCAACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTGCC 622820 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||| || ||||| Sbjct 622821 AGCATTGAATAGAGTGGG 622838 >seq43 Length=2177010 Score = 114 bits (126), Expect = 2e-19 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| || ||||||||||| || || | || |||||||| || |||||| | | Sbjct 83908 CCAACTACCTTGATATCAAGCCCCTTCTGGACGTTGGCTGCAAGACTGTTGCCAACATGA 83849 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 ||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 83848 TCAAGGGCAAGTCCCCCGAGGAGATCCGTAAGACGTTTAACAT 83806 >seq59 Length=259089 Score = 95.1 bits (104), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| ||||| |||||| |||| || || ||| | | Sbjct 235833 GTACTTGGTAACGGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCAAGCTCACCGGGGAG 235892 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| || || || | |||||||||||| |||| Sbjct 235893 GATGAGACGGACAGAGGTCTGGATCTCTCGGG 235924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916235017921973