Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 seq20 104 2e-17 seq32 102 5e-17 >seq2 Length=1405217 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||||||||||||||| ||||| ||||| ||| |||| |||| Sbjct 409110 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 409169 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| ||||| || | || | ||||||||||| Sbjct 409170 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 409229 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 409230 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 409289 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| ||||| || || |||||||| Sbjct 409290 TTCCCCGTGAGAGTCTTGACGAAAATCTGCAT 409321 >seq20 Length=1074596 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| || || | ||| | || |||| Sbjct 147054 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCC 147113 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || |||||||| || || ||||| | || | ||||||||||| Sbjct 147114 TCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCC 147173 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| || | ||| || Sbjct 147174 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAAT 147229 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAA 34967 |||||| || ||||||||||| |||| Sbjct 147230 GGTCTTGCCAGTGAGGGTCTTGACAA 147255 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| || || | ||| |||| |||| Sbjct 147685 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCC 147744 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 147745 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 147804 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| || | ||| |||||| Sbjct 147805 TGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTC 147864 Query 34946 TTTCCCGT 34953 || ||||| Sbjct 147865 TTGCCCGT 147872 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || |||||||| ||||||||||| || |||| | || Sbjct 146598 AGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCC 146657 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 146658 TCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 146717 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || || ||| |||| ||||| || | ||| || |||| || | Sbjct 146718 TGGATCTTGGACTTCACGTTGTCGATGGTATCGCTT-----GACTCAACCTCAAGAGTGA 146772 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||||| || | |||||| || || || ||||| Sbjct 146773 TGGTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| || || | ||| |||| |||| Sbjct 147337 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCC 147396 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| |||||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 147397 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 147455 >seq32 Length=2292469 Score = 102 bits (112), Expect = 5e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| | || |||| || || ||||| || || |||| Sbjct 449923 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 449982 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 | ||||| ||||| || | || | ||||||||||| | || || |||||| Sbjct 449983 TGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 450042 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 450043 CGATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 450102 Query 34968 A 34968 | Sbjct 450103 A 450103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692375276233