Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq30 318 6e-82 seq2 127 2e-24 seq20 113 4e-20 seq32 107 2e-18 >seq30 Length=762562 Score = 318 bits (352), Expect = 6e-82 Identities = 1009/1541 (65%), Gaps = 45/1541 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 ||||| ||||| ||||| || || || || || ||| | || | |||| || | || Sbjct 621529 TTCACGACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAGATGTTGGAAGTGTAAGGC 621588 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| ||||||| ||||||| ||||||| ||| | || ||||||||| || | Sbjct 621589 TCAAAGCACTCGTTATTGCCCAGGATCTGCGAGGTACTGGCAGTGGGCATGGGTGCAAGG 621648 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCT-TCAGAGCCGCCCAGTCCCA 148438 |||| |||||| | |||| | | || | | || || | |||| | |||||||||| Sbjct 621649 AGCAAACTGTTGCGGATACCGTGTTCCTTGACCT-GCTCTCTGAGAGTCTCCCAGTCCCA 621707 Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCT 148498 || || || ||||||||||||| ||| |||| || || || | ||| ||| Sbjct 621708 AAGGTCGGAGGGCTTCACGTTCCACATATCGAACTGGAGGATACCCTCGGAAGCAGGGGA 621767 Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGC-TCGCCTCGAGCG 148557 ||||| | | | | ||| || || | | || ||||| | ||| | || ||| | Sbjct 621768 GCCCTTGAAGGTGGAGTAGGGACCTTCCTCCTTAGCCAGCT-GCACCGAGGCAGTGAGAG 621826 Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC---AGCGCCGC-CGACTCGCTT 148613 | ||| || || ||||| ||| ||| |||||||| | ||| | || | Sbjct 621827 CAGCGTGATAGATGGTCTCAAAAATCTGCTTGTTGAGCTCACGAGCCTCAGGAGAC---- 621882 Query 148614 TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATG 148673 ||| | ||||| ||||| | || || || ||||| ||||| ||||| || || || Sbjct 621883 TCGAAGGGCATGCGCAGAGCAAGGAAAGCATCCGCAAGACCCTGGACGCCAACACCGATA 621942 Query 148674 GGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGATAGTGGTTGCGGTCGAT 148732 || ||||| |||||| | ||| || ||| || ||||||||||| || || Sbjct 621943 GGTCGGTGACGCATGTTGCTGTTGCGGGC-CTCAGGGACAGGATAGTGGTTCACATCAAT 622001 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 |||| ||| |||||||| || || |||| || | || ||||| || || || || Sbjct 622002 GATCCTGTTGAGATTGCGAACGACAACCTGGGTGACCTTGTGCAGCTTCTCGAAGTCATA 622061 Query 148793 CTTG---TCATC-TA--CGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGC 148846 | ||||| || |||| | | || |||| || || || |||||||| || Sbjct 622062 GCAGGCTTCATCGTAGTTGATGTACGAGGGCAGAGCGAGGGATGCCAGGTTGCACACAGC 622121 Query 148847 CGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCAC 148906 |||||| ||||| | |||||| | ||||| | ||||| ||| || | || Sbjct 622122 AACCTCATCAGGGGCACAGTACTCAATAATCTCAGTGCACAAGTTGGAGCTTCGAATGGT 622181 Query 148907 GCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCC 148966 |||| |||||| || || ||||||| |||||| ||||||||| |||||| | || Sbjct 622182 ACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTT 622241 Query 148967 GCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGC---AGGTCCTGCGCGCGCACTTG 149023 |||||| || ||| | || | || | | || | || | ||| || |||| Sbjct 622242 GCCAGTCTCGGTCTGAGCCTCAAGAAT-AGC--ATACCAGAGCTTCTGAGC-----CTTG 622293 Query 149024 CTGCTCGTAGCGACCCT------CCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTC 149077 || || | |||||||| |||||||||| |||||| ||| ||| | || Sbjct 622294 ATGGTC-TTGCGACCCTTGCCAGCCTGCTCGTACTTCTCATACAGAGCCTCAAACTCATC 622352 Query 149078 GCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTC 149137 ||||||||| ||| | ||||||||||||| | ||||||||||| | ||| |||||| Sbjct 622353 GCCGTAGCAGTCGGCAAGACCGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTT 622412 Query 149138 CGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC 149197 | | || |||||||| || |||||||| | |||||| || | |||||||| || Sbjct 622413 CTTCTCAACACGCTTCATGAAGAGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGC 622472 Query 149198 CTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTG 149257 || || ||| ||| |||||||| || | || | |||| ||| Sbjct 622473 GCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTG 622532 Query 149258 CCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTG 149314 ||| ||||||| ||| | |||| || || ||| ||||| |||||||| || | Sbjct 622533 CCAGGGCTCAAGGTAGATAGCGAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCAACATA 622592 Query 149315 GCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT 149374 || | ||||||| || ||||| | ||| || | ||| ||| ||| ||||| || Sbjct 622593 TCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGT 622652 Query 149375 AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GC 149433 | | ||| |||| || || | ||||||||| | || ||||| || || Sbjct 622653 ACCGGCGATGTAGGAGCCGGTGGCACGGATGCGGTGCACGTTCAGACCAATGCCACCAGC 622712 Query 149434 CGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGC 149493 | | ||| || || || ||| ||| || ||||| ||||| |||||||| Sbjct 622713 CAT-CTTGGAAATCATGGCACAGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCT 622771 Query 149494 GCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACA 149553 ||||||| | ||| ||||| || ||| || || | | ||||| || ||| | Sbjct 622772 CCTTCATGTCAACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATA 622831 Query 149554 TGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACG 149612 |||||| |||||| || || | || || | ||| | | ||| | ||| || || Sbjct 622832 GAGTGGGGGAGGCGTGGGTGAAGAACTTGCTCG-ACATGAGGTTGTATGTCTCAAGGACA 622890 Query 149613 CGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGC 149672 || || || || || || |||||| | | || ||||| | ||| ||||| || ||| Sbjct 622891 CGCTCAATATCGTCACCCCAGATGCCAACAGACACACGCATGATCATGTGCTGAGGGCGC 622950 Query 149673 TCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAG 149732 || | | ||||| |||| ||||| | ||| || || |||||| |||||||| Sbjct 622951 TCGACAATCTTGTTATCAATCTTGAGGAGGTATGATCGCTCCAGAGTCTTGAAGCCAAAG 623010 Query 149733 TACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 || | ||| | ||||| ||| | | | ||||||| | ||| Sbjct 623011 TATTGGTATTGGAAGTCACGGTCATAGACAATGGCAGAGTC 623051 >seq2 Length=1405217 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| ||||| || ||||| |||| || ||| | | | |||||||||||||||| Sbjct 409124 GGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAGCTGCTTGC 409182 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||| || || || ||||| |||||||| |||||| || Sbjct 409183 CAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 409242 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || |||| Sbjct 409243 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGAG 409302 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 409303 TCTTGACGAAAATCTGCAT 409321 >seq20 Length=1074596 Score = 113 bits (124), Expect = 4e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | | ||| | | | ||||| ||||||||||| Sbjct 147700 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 147758 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| || |||||||| |||||||| ||||| ||| Sbjct 147759 GGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 147818 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | ||||| | || ||| || |||| ||| | ||| ||||| |||| Sbjct 147819 GACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 147874 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || || || |||| || ||| ||| |||||| |||||||| || Sbjct 146613 GTAGATTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACC-GTCCTCCAGCTGCTTACC 146671 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| ||||| || || |||||||| |||||| ||| Sbjct 146672 AGCAAAGATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTT 146731 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | | ||| || || | |||| ||| || ||||||| || Sbjct 146732 CACGTTGTCGATGGTATCGCTTGACTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGT 146791 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 146792 CTTGACGAAAATTTGCAT 146809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/123 (79%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | | ||| | | | ||||| ||||||||||| Sbjct 147352 GTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 147410 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT--TTGC 133580 ||| |||| | ||||||||||| || |||||||| |||||||| ||||| |||| Sbjct 147411 GGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGNTTGC 147470 Query 133581 TTG 133583 ||| Sbjct 147471 TTG 147473 >seq32 Length=2292469 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | ||||| |||||||| || || || ||||| |||||| Sbjct 449958 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTG 450017 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||||| || ||| || || | ||||| | Sbjct 450018 TCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCGACCTCAAGGGTGATG 450077 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 450078 GTCTTGCCCGTCAGGGTCTTCACGAAA 450104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420153424680