Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq35 161 1e-33 >seq35 Length=674057 Score = 161 bits (178), Expect = 1e-33 Identities = 352/514 (68%), Gaps = 26/514 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||||||||| ||||||||||||||| | |||| Sbjct 114603 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGATTGACC 114661 Query 1455835 TCGGCGCCGACACGGTCCAC-TGGGTGT------CGCTGAGC-GACGACGAGCGCCATTT 1455886 | | | | | | || | || || ||| | | | |||||||| || Sbjct 114662 T----GTCTA-AGGATCTTCATGATTGGAACAACCGCCTAACTGCCGACGAGCAGTTCTT 114716 Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946 || ||| |||| ||||| ||| || || |||||||| || ||||||||| | Sbjct 114717 TGTCTCTCACATCCTTGCCTTCTTT-GCTGCTTCTGATGGCATTGTCAACGAGAACCTCG 114775 Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | || || | |||||||| | || ||||| || | || || || ||||||| Sbjct 114776 TTGAGCGGTTCAGTGGCGAGGTCCAGATCCCTGAGGCCCGATGCTTCTATGGATTCCAGA 114835 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || || ||||| ||||| ||||||||||| || |||||||| ||| |||||| Sbjct 114836 TCATGATGGAGAATATCCATTCTGAGACCTACTCGCTGCTTATCGACACTTACATCAAGG 114895 Query 1456067 ACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || || | ||| ||||||| || ||||| || | || | | | || Sbjct 114896 AGCC-TTCTCAGCGCACCTACCTCTTCAATGCTATCGAGACCATCCCCTGTATCCGAAAG 114954 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||| ||||| || |||||| ||||| | ||| | ||||||| ||| Sbjct 114955 AAGGCCGATTGGGCCATCCGATGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGC 115009 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | ||| || || |||||||| || || ||| ||| ||| |||||| Sbjct 115010 GTCTGGTTGCCTTCGCTGCTGTCGAGGGTATTTTCTTCAGCGGCGCCTTCGCTTCCATCT 115069 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||||||||||||||| || ||||| ||||| Sbjct 115070 TCTGGCTCAAGAAGCGCGGTCTTATGCCTGGTCT 115103 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || ||||| | |||||| | ||||| | | |||| | ||||| || || ||||| Sbjct 115222 GATGCCGTGAACATCGAGCAGGAGTTCCTTACCGAGGCTCTGCCTTGTGCCCTGCTCGGC 115281 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 ||||| ||| | |||||| ||||||||||| || || || ||||| || |||| | Sbjct 115282 ATGAATGCCGAC-CTCATGAAGCAGTACATTGAGTTC-GTTGCTGACCGACTACTCGTCG 115339 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 | || || || ||||| ||| | | ||||||| ||| | |||||| ||| Sbjct 115340 CTCTTGGTAACG-AGAAGGTCTATAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATC 115398 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGC 1456770 || |||| |||||||||||||| |||||| || || || || ||| || ||||| Sbjct 115399 TCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAAGCCGGT 115458 Query 1456771 GTC 1456773 ||| Sbjct 115459 GTC 115461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177800879653334