Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq20 114 1e-20 >seq20 Length=1074596 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| || ||| || || || |||| |||||||||||||| ||||| Sbjct 146619 TCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 146678 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | ||||| | |||||||||| |||||| ||||| ||| Sbjct 146679 ATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCA-CGTT 146737 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || ||||| || || ||||| | ||||| || || || ||||| || || || Sbjct 146738 GTCGATGGTATCGCTTGACTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGAC 146797 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 146798 GAAAATTTGCAT 146809 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| || | ||| ||||| ||||||||||| ||| Sbjct 146811 CCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTG 146870 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || ||||| || || || || || | |||||||| |||| ||| Sbjct 146871 AGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGA 146930 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | || ||| || || ||| Sbjct 146931 ATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACC 146990 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | ||| || ||||| |||||||| Sbjct 146991 TCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||||| | ||| || | || || |||||||| || || || Sbjct 147357 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 147416 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT--TTGCTT 35658 ||||| ||||||||||||| || | || |||||||||| ||||| |||||| Sbjct 147417 AATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGNTTGCTT 147472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||||| | ||| || | || || |||||||| || || || Sbjct 147705 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 147764 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| || | || |||||||||| ||||| ||| | || Sbjct 147765 AATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 147823 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | ||||| || || ||||| | || || || || ||||||| Sbjct 147824 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 147874 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||||| | |||||| | || || || ||||| || ||||| Sbjct 147074 CTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAA 147133 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||| ||||| | || | || |||||||||| ||||| ||| | | | Sbjct 147134 GATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 147193 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || || ||||| | || || || || || || | || || || Sbjct 147194 GTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 147253 Query 35725 AA 35726 || Sbjct 147254 AA 147255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792997063560