Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq30 237 2e-57 seq35 150 2e-31 >seq30 Length=762562 Score = 237 bits (262), Expect = 2e-57 Identities = 1084/1694 (64%), Gaps = 65/1694 (4%) Strand=Plus/Plus Query 117805 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 117863 |||| ||||| ||| || ||| ||||| | ||| ||||||||||| || |||||||| Sbjct 621191 TGAATTGAATAGGGGCT-GCCGCGGCCTGCGTTCGCAGGTAGTACATGCCAGTCTTGAGA 621249 Query 117864 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 || |||||||| | | ||||| || | |||| | ||| || | |||| Sbjct 621250 CCAAGCTTCCAGCCTGTGAAGTGCATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATG 621309 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||| | ||||| ||||| || ||| || || || || ||||| | | Sbjct 621310 TGGATGTTGAGGGACTGGGACTGATCAATAAAGGCACCTCGGTCGGCAGCCATCTGGACG 621369 Query 117984 ACATCCTTCATCT-TGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 || || || ||| | |||||||||||| |||| || ||| | || | ||| Sbjct 621370 AC---CTGGCGCTGTGAAATCTCCCACACAGTCTTGTACAGAGCCTTGACTTCGGCAGGG 621426 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCC 118097 || | ||| || |||||||| || | | | | |||| | | |||||| | Sbjct 621427 ATGTTTGGGATGTTCTGGATGGAGCCGTTCTC---GGCAATGATTCGGTTCTTCATGGCA 621483 Query 118098 TTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAAC 118157 | ||||| | ||| || | |||||||| | || || || || ||| Sbjct 621484 TCCGACCACAAACCCATGTCGACGAGATCCTTGAGCAGCCAGGGGTTCACGACCTGGAAC 621543 Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 ||||| || ||| || | | | ||||| |||| ||||| |||||||||||||| || Sbjct 621544 TCACCAGCAAGGACTCGGCGCTGGTAGATGTTGGAAGTGTAAGGCTCAAAGCACTCGTTA 621603 Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 118277 || |||| ||| || | || ||| |||||||||||||| | ||| | ||||| ||| Sbjct 621604 TTGCCCAGGATCTGCGAGGTACTGGCAGTGGGCATGGGTGCAAGGAGCAAACTGTTGCGG 621663 Query 118278 AGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GT-TGAGCTTTGT 118333 | ||| | |||| | | | || |||||| |||||||| | || ||| | Sbjct 621664 ATACCGTGTTCCTTGACCTGCTCTCTGAGAGTCTCCCAGTCCCAAAGGTCGGAG----GG 621719 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 || | | | ||||||||| |||||||||||||| | ||| || || || |||| || || Sbjct 621720 CTTCACGTTCCACATATCGAACTGGAGGATACCCTCGGAAGCAGGGGAGCCCTTGAAGGT 621779 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 || || || || ||| |||| | | ||| || ||| || |||||||| Sbjct 621780 GGAGTAGGGACCTTCCTCCTTAGCCAGCTGCACCGAG---GCAGTGAGAGCAGCGTGATA 621836 Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 || || |||||||| | || | | ||||| || || || | | | Sbjct 621837 GATGGTCTCAAAAATCTGCTTGTTGAGCTCACGAGCCTCAGGAGACTCGAA-GGGCATGC 621895 Query 118511 GCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 118569 ||| | || || ||||||| ||||| ||||| || | || || || || || | || Sbjct 621896 GCAGAGCAAGGAAAGCATCCGCAAGACCCTGGACGCCAACACCGATAGGTCGGTGACGCA 621955 Query 118570 TATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTA 118626 | || || || || ||| || ||||| ||| ||| || | ||| || | Sbjct 621956 TGTTGCTGTTGCG---GGCCTCAGGGACAGGATAGTGGTTCACATCAATGATCCTGTTGA 622012 Query 118627 GATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC- 118685 |||| |||||||| |||| | || ||||| ||| | ||| | | | | || Sbjct 622013 GATTGCGAACGACAACCTGGGTGACCTTGTGCAGCTTCTCGAAGTCATAGCAG-GCTTCA 622071 Query 118686 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 118745 || | |||| ||| || || |||| || ||||| || ||||||| |||||| Sbjct 622072 TCGTAGTTGATGTACGAGGGCAGAGCGAGGGATGCCAGGTTGCACACAGCAACCTCATCA 622131 Query 118746 TTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTC 118805 || |||||| ||||| || ||||||||||| || || |||||| |||| |||| Sbjct 622132 GGGGCACAGTACTCAATAATCTCAGTGCACAAGTTGGAGCTTCGAATGGTACCCAGGTTC 622191 Query 118806 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 || || || ||| ||| || |||||||| |||||| | || | || ||||| Sbjct 622192 TTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCG 622251 Query 118866 GTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCG 118924 || || | || |||||||| | ||||| | || | ||| | ||| ||| || Sbjct 622252 GTCTGAGCCTCAAGAATAGCATACCAGAGCTTCTG-AGC---CTTGATGGTCTTG---CG 622304 Query 118925 CCCCT------CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC 118978 |||| | | ||||||||| || || || |||||||| || || | || Sbjct 622305 ACCCTTGCCAGCCTGCTCGTACTTCTCATACAGAGCCTCAAACTCATCGCCGTAGCAGTC 622364 Query 118979 TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCG 119038 | || || || || || ||||| | ||| | ||| | || || |||||| || Sbjct 622365 GGCAAGACCGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACG 622424 Query 119039 CTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTC 119098 |||||||||||| || ||||||||||| || ||| || || ||| |||| | || || Sbjct 622425 CTTCATGAAGAGATCGGGGATCCAGAGAGCAAGGAACAGGTCGCGAGCGCGAACCTCCTC 622484 Query 119099 ATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAG 119158 | || || || |||| || | || || | || ||||| |||||| || || || Sbjct 622485 CTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCCGAGTGCCAGGGCTCAAG 622544 Query 119159 GTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGT 119212 ||| | |||| | || | | || ||| |||||| ||||| | ||||| Sbjct 622545 GTAGATAGCGAAGGCACC---AGGTCGCTTGTTGCCACCCTGGTCAACATATCGGGCAGT 622601 Query 119213 GGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA- 119270 | ||| || || || ||||| || ||| || | ||| || || || || ||| Sbjct 622602 GTTGTTGAAGACTCGGAGCATGGGGGTGACGCCGTTGGAAGTACCGTTGGTACCGGCGAT 622661 Query 119271 ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTT 119330 || ||| | |||| | || ||| | || || |||||| || || ||| ||| Sbjct 622662 GTAGGAGCC--GGTGGCACGGATGCGGTGCACGTTCAGACCAATGCCACCAGCCATCTTG 622719 Query 119331 GAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTT 119390 || || || || | ||||| | | ||||| || || || ||| |||| | Sbjct 622720 GAAATCATGGCACAGGTCTTGAGAGTATCATAGATACCCTCAATGCTGTCCTCCTTCATG 622779 Query 119391 GCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGT 119450 | | |||||||| |||| || ||| || || ||||| ||||| ||||| || Sbjct 622780 TCAACCAGGAAGCATGAAGACAGCTGGGGCTGAGGAGTGCCAGCATTGAATAGAGTGGGG 622839 Query 119451 GTCGCGTGGATGAA 119464 | |||||| |||| Sbjct 622840 GAGGCGTGGGTGAA 622853 >seq35 Length=674057 Score = 150 bits (166), Expect = 2e-31 Identities = 357/534 (67%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 115445 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 115386 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| || || | | | || | |||| ||| || || Sbjct 115385 AAGTCGAAGGGGTTGGAAGACTTATAGACCTTCTCGTTA-CCAAGAGCGACGAGTAGTCG 115327 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||||||||||| ||| |||| ||||| |||| ||| ||| Sbjct 115326 GTCAGCAACGAACTCAATGTACTGCTTCATGAGGTCGGCATTCATGCCGAGCAGGGCACA 115267 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| ||| |||| ||| || || | |||| | || Sbjct 115266 AGGCAGAGCCTCGGTAAGGAACTCCTGCTCGATGTTCACGGCATCAGTAATGATGTCCTG 115207 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 |||| || | ||| || | | ||| | | | || ||| || | |||| || Sbjct 115206 AATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CAAG-CAAAGTC 115150 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||||||||||||||| |||||||| || || ||||| |||||| ||||| || Sbjct 115149 GGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCAGGCATAAG 115090 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | | || | ||| |||||| || ||||| || Sbjct 115089 ACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAAGGCGCCGCTGAAGAAAATACCCTCGAC 115030 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| ||||||| |||||||| | ||| | | ||| || Sbjct 115029 AGCAGCGAAGGCAACCAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGGAT 114970 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 ||||| | ||||| || |||||| |||| ||||| ||| || | ||||| Sbjct 114969 GGCCCAATCGGCCTTCTTTCGGATACAGGGGATGGTCTCGATAGCATTGAAGAG 114916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434372842920