Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq20 154 4e-32 seq16 149 2e-30 seq97 96.9 1e-14 seq2 96.9 1e-14 seq32 86.0 2e-11 >seq20 Length=1074596 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | || || || || || |||||||| || || ||||| || | Sbjct 146803 TTTGCATACCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGT 146862 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | ||||| || || ||||| |||||||| || ||||| || || ||||||| Sbjct 146863 AGTCGCTGAGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGAT 146922 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | |||||||| ||||| | ||| |||| Sbjct 146923 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATG 146982 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || || || || ||||| |||||||| Sbjct 146983 ACTCTACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 129 bits (142), Expect = 2e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || || || || ||||| Sbjct 147035 CATACCACCACGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATC 147094 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||||| ||||| || ||||| || ||||||||||| ||||| || || ||||| Sbjct 147095 GGCGAGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGG 147154 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || ||||| || || | || || | || Sbjct 147155 GGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTC 147214 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || || || |||| ||||| || || || || || |||| Sbjct 147215 GACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAA 147255 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || ||||||||||| || || || || ||||| || Sbjct 146583 CCACCACGGAGACGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTC 146642 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || || || || || || ||||||||||| || || ||||| ||||||||| Sbjct 146643 AGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGA 146702 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || || ||||| || || | || || || || || | ||| || ||||| Sbjct 146703 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCGCTTGACTCAACC 146762 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||||||||| | || || || ||||| ||||| Sbjct 146763 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 89.7 bits (98), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || || || || ||||| Sbjct 147666 CATACCACCACGGAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATC 147725 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || || || || || || | || ||||| || || Sbjct 147726 GGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGG 147785 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || || || || || | || || | || Sbjct 147786 GGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTC 147845 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || |||| ||||| || || Sbjct 147846 GACCTCGAGGGTAATGGTCTTGCCCGT 147872 >seq16 Length=1247471 Score = 149 bits (164), Expect = 2e-30 Identities = 554/861 (64%), Gaps = 17/861 (2%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || || | ||| | || ||||| Sbjct 336611 GATATTATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 336552 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || || | || || || | || || Sbjct 336551 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCAGAACACC 336492 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | |||||| | |||| || || Sbjct 336491 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTTGCCGATGCTGAGG--TC----CAG 336438 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || | | || | ||| |||| || || || || Sbjct 336437 GCCGACATGAAGCACTTCCCCTTCAAGATCATTG-ACAAG--GGTGGCAAGCCCATCATC 336381 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 ||||| || | || || || || || || ||||| || || || || ||||| Sbjct 336380 GAGGTCGAGTTCAAGGGCGAGCAGAAGACCTTCACTCCCGAGGAGATCTCCTCCATGGTC 336321 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | || || | || | ||||| || || | | || ||| Sbjct 336320 CTCACCAAGATGCGAGAGACCGCCGAGTCTTACCTTGGTGAGACTGTCAACAACGCCGTT 336261 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | ||||| || ||||| || || || | |||||| || || || ||||| || | Sbjct 336260 GTCACTGTTCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 336201 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || || || || Sbjct 336200 ATCGCTGGCCTCAACGTTCTCCGAATTATCAACGAGCCTACCGCTGCTGCCATCGCCTAC 336141 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | | || || || | || || || ||| | ||||||||| Sbjct 336140 GGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGT 336081 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||||||||| || || || || | || ||||| || || || || || | || || Sbjct 336080 ACTTTTGATGTGTCTCTCCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCC 336021 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || || ||||| || || || || || Sbjct 336020 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAAC 335961 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCT 349974 ||||| || | |||| || | || || || | | || |||| || || Sbjct 335960 GAATTCAAAAG-GAAGCACAAGAAAGACCTTTCCTCCAACGTTCGCGCTCTGCGACGTCT 335902 Query 349975 AAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGA 350034 ||||||| || || ||||| ||||| | | || || || |||| |||||||| || Sbjct 335901 CCGAACTGCTTGCGAGCGTGCCAAGCGAACTCTTTCCTCCTCTGCCCAGACCTCTATCGA 335842 Query 350035 AATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGA 350094 ||||| ||||| || |||| || |||| | ||||| || || || || ||||| Sbjct 335841 GATTGACTCTCTGTTCGAGGGCATTGACTTCTACACCTCTATCACCCGAGCCCGATTTGA 335782 Query 350095 AGAATTATGTATGGATCtttt 350115 ||| | || ||||||||| Sbjct 335781 GGAACTCTGCCAGGATCTTTT 335761 >seq97 Length=1508482 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | ||||| ||| || || | ||||||||||||||||| || || Sbjct 166384 CGGGGCACACCCAGGGTAACGTTC---TTCGACGACACACCAGCAAAGTGGAAGGTGTTC 166440 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||||| ||||| |||||||| || | ||| ||||||||||| Sbjct 166441 AGCGTCATCTGGGTGGCAGGCTCTCCAATGGACTGCGCCGCCAAAACACCAACCATTTCA 166500 Query 377578 CCAGGATTGACAATAGC 377594 ||||| || |||| ||| Sbjct 166501 CCAGGGTTAACAAAAGC 166517 Score = 93.3 bits (102), Expect = 1e-13 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || |||| || ||||| || ||||| |||| | ||| |||||||| Sbjct 167145 ATCTTCCAGAGCCTTAACCAGCCGTCGCTGGATGTAACCTGTTTCAGCAGTCTTAACTGC 167204 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 |||||||| | ||| | || ||| |||| || |||||||| || ||||||||||| || Sbjct 167205 GGTATCAATAAGACCTTCTCGGCCAGCCATGGCGTGGAAGAAGAACTCAGTAGGAGTGAG 167264 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | |||| |||| | || || | || | || || | || | ||| || Sbjct 167265 ACCACGGAGATATGAGTTCTCGACGAAGCCACGGGCTTCGGGAGAGTAGTCGTCTTTGGT 167324 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 |||| || | ||| || | || || || | || || || || || || || |||| Sbjct 167325 GAAATGGGGCAGTGTGCGGTACTTGAAACCGAAGGGGATACGCTTGCCTTCGACGATCTG 167384 Query 378441 TTGACC 378446 || || Sbjct 167385 CTGTCC 167390 >seq2 Length=1405217 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || || || || || Sbjct 409094 ACCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 409153 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || |||||||| || || Sbjct 409154 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 409213 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | || || | || || Sbjct 409214 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 409273 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 409274 CTCAAGGGTGATCGTCTTCCCCGTGAGAGTCTTGACGAAAATCTGCAT 409321 >seq32 Length=2292469 Score = 86.0 bits (94), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | ||||| ||||| || || || || ||||||||||| Sbjct 449925 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATG 449984 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || |||||||| || ||||| || || || ||||| || || | || || || || Sbjct 449985 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 450044 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | || || ||||| || | ||||| || || || || || || ||| Sbjct 450045 ATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 450104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252322680921