Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq30 237 2e-57 seq65 125 8e-24 >seq30 Length=762562 Score = 237 bits (262), Expect = 2e-57 Identities = 518/770 (67%), Gaps = 22/770 (3%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | || ||| |||||||| ||||||| Sbjct 622946 CCTCAGCACATGATCATGCGTGTGTCTGTTGGCATCTGGGGTGACGATATTGAGCGTGTC 622887 Query 53240 CGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTG 53296 | |||||| ||| || | ||| ||| |||| ||| || |||||| | || || || Sbjct 622886 CTTGAGACATACAACCTCATGTCGAGC---AAGTTCTTCACCCACGCCTCCCCCACTCTA 622830 Query 53297 TTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGAT 53356 ||||| ||||| || ||| || ||| |||| ||||||||||| | |||||||| Sbjct 622829 TTCAATGCTGGCACTCCTCAGCCCCAGCTGTCTTCATGCTTCCTGGTTGACATGAAGGAG 622770 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| || || || ||||| || || |||||| |||||| || |||||| | | Sbjct 622769 GACAGCATTGAGGGTATCTATGATACTCTCAAGACCTGTGCCATGATTTCCAAGATGGCT 622710 Query 53417 GGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 ||||| || ||| | || ||| | | ||||||| | |||| | ||| || || Sbjct 622709 GGTGGCATTGGTCTGAACGTGCACCG-CATCCGTGCCACCGGCTCCTACATCGCCGGTAC 622651 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 ||||| || | || || || |||||||| |||||||||||||| ||||| || Sbjct 622650 CAACGGTACTTCCAACGGCGTCACCCCCATGCTCCGAGTCTTCAACAACACTGCCCGATA 622591 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 || |||||||||| ||||| || | ||||| |||||||| ||||| ||||| Sbjct 622590 TGTTGACCAGGGTGGCAACAAGCGACCTGGTGCCTTCGCTATCTACCTTGAGCCCTGGCA 622531 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 | | || | | ||||| || || ||||| ||| || || | || ||| | ||| Sbjct 622530 CTCGGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGC 622471 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 || |||||||| ||||| ||||| || || ||||||||| | || |||||| | Sbjct 622470 TCGCGACCTGTTCCTTGCTCTCTGGATCCCCGATCTCTTCATGAAGCGTGTTGAGAAGAA 622411 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTG 53774 || || ||| ||| |||||||| || ||||||||||| | | | | || |||||| | Sbjct 622410 CGGCGACTGGACCCTCATGTGCCCTAATGAGTGCCCCGGTCTTGCCGACTG-CTACGGCG 622352 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGA 53828 | |||||| | | ||||| || |||| || | |||| ||| |||| Sbjct 622351 ATGAGTTTGAGGCTCTGTATGAGAAGTACGAGCAGGCTGGCAAGGGTCGC------AAGA 622298 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | || | ||| |||| || || || ||| ||||| || | | Sbjct 622297 CCATCAAGGCTCAGAAGCTCTGGTATGCTATTCTTGAGGCTCAGACCGAGACTGGCAACC 622238 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | | |||| ||||||||| |||| ||||| |||||||||||| Sbjct 622237 CCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGTAACCAGAAGAAC 622188 >seq65 Length=1864066 Score = 125 bits (138), Expect = 8e-24 Identities = 194/275 (71%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || |||||||| | ||||||| || || ||||| ||||| || || || | |||| Sbjct 697517 AGACGAGTGAAGGTATAACGAGGACTGGCGGCATCTGCACCACCTGCTAGTCGAGAACCG 697576 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| || |||| | || | ||| |||| ||||||||||| ||||||| | Sbjct 697577 AAGTTGCCACTTGGTTCCAGGCAATTGATGTTATTGGATCCCACAAAGTTCTGAGCCAGG 697636 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | ||| || |||||| | || || ||||| || || || || || | || Sbjct 697637 CCTATAATGGTTTGCTGGAGGGATCCTTCGCCGTGGTGGTATGCAGTTTGTTCAGAAACA 697696 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| || |||||||| |||| |||| || ||| |||||| ||| || | Sbjct 697697 TAACCAGCCAACTCCACCACCTTCTTGTCTTTGAC--CAAGTTTCTCTTGAAGCATGCGT 697754 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | | |||||||||||||| ||||| | ||||||| Sbjct 697755 AGAGCACCTTGCGCTGACCAGGCTTGAAACCATCC 697789 Score = 104 bits (114), Expect = 3e-17 Identities = 200/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 152025 ACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084 ||| |||||| | || || | ||||| ||||| |||||||| || || | || || Sbjct 697519 ACGAGTGAAGGTATAACGAGGACTGGCGGCATCTGCACCACCTGCTAGTCGAGAACCGAA 697578 Query 152085 CTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 | ||| || || ||| |||| ||| |||| ||||| || |||||||||| Sbjct 697579 GTTGCCACTTGGTTCCAGGCAATTGATGTTATTGGATCCCACAAAGTTCTGAGCCAGGCC 697638 Query 152145 CACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 | ||| || ||| || |||| |||||||| || || || || || | | || Sbjct 697639 TATAATGGTTTGCTGGAGGGATCCTTCGCCGTGGTGGTATGCAGTTTGTTCAGAAACATA 697698 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 || ||||||| | |||||||| |||| | || ||| |||||| || ||||| | Sbjct 697699 ACCAGCCAACTCCACCACCTTCTTGTCTTTGACCAAGTTTCTCTTGAAGCATGCGTAGAG 697758 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 |||||||||||| || || ||||| |||| || |||||| || ||| || Sbjct 697759 CACCTTGCGCTGACCAGGCTTGAAACCATCCAGGACAGAAGGAATGGATCGCATG 697813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215268098600