Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 9e-16 >seq20 Length=1074596 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || || || || || || | ||| Sbjct 147037 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCC 146978 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || ||||| || ||||| || || ||||| Sbjct 146977 GATACTATTGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 146918 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC--CGATTACA 27165 ||||| | || | |||||| ||||| | || ||| | ||| | | || ||| |||| Sbjct 146917 CAGCGACTTATCTTCGCCGGAAAACAGCTTGAGGACGGA-CGAAC-TCTCAGCGACTACA 146860 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| ||||| || || | || |||| |||| |||| ||||| || Sbjct 146859 ACATTCAGAAGGAATCTACTCTGCACCTGGTCCTGCGACTGCGTGGTGGTAT 146808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || || || || |||||| | ||||| || || || || | |||||| | || | Sbjct 147255 TTGTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCG 147196 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | ||||| || ||||| ||||| || ||||| || || || ||||||||| | | Sbjct 147195 ACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGA 147136 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | || ||||| ||| | || || | ||| | ||||||||||||| || |||| Sbjct 147135 TCTTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGG 147076 Query 27178 AGTCGAC 27184 |||| || Sbjct 147075 AGTCCAC 147069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| |||||| | ||||| || || || || | || ||| | || || | ||||| Sbjct 147874 TGACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGT 147815 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||| ||||| || ||||| || || || || ||||| || || | |||||||| Sbjct 147814 CCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCA 147755 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 | || | || || | ||| | ||||||||||||| || |||||||| || Sbjct 147754 AGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCAC 147700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917818296640