Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 3e-15 >seq20 Length=1074596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || ||| || |||||| |||| ||||||||||| || || || Sbjct 146847 TCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAG 146906 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| |||||||| || | ||| | || ||| |||||| ||| ||| || | | Sbjct 146907 ATAAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTG 146966 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| ||||| || || | ||||| | |||||||| || || || ||| Sbjct 146967 TCAATAGTATCGGATGACTCTACCTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACA 147026 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 147027 AAGATCTGCAT 147037 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || ||||| ||| || || || |||| || ||||| || || ||||| Sbjct 146619 TCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAG 146678 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| ||||||||||| | || | | ||| |||||| ||| || || | ||| Sbjct 146679 ATAAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTCA-CGTT 146737 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | |||||||| ||||| || || | ||||| | ||||| |||| || || || Sbjct 146738 GTCGATGGTATCGCTTGACTCAACCTCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGAC 146797 Query 39273 AAAGATTTGCAT 39284 || |||||||| Sbjct 146798 GAAAATTTGCAT 146809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545039845691