Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 7e-16 seq2 86.0 4e-12 >seq20 Length=1074596 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||||||||| || ||||| ||||| || || || | Sbjct 147037 ATGCAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCC 146978 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | |||| || || ||||| || || | || || ||||| Sbjct 146977 GATACTATTGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAG 146918 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| ||||| || || |||| ||| ||| | |||| |||||| Sbjct 146917 CAGCGACTTATCTTCGCCGGAAAACAGCTTGAGGACGGACGAACTCTCAGCGACTACAAC 146858 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 146857 ATTCAGAAGGAATCTAC 146841 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 23623 GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA- 23681 || || |||||||| || || || || || ||||| || || ||| | |||||| | || Sbjct 147253 GTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCGAC 147194 Query 23682 AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAAT 23741 ||| | || | || | || ||||| || || | || || || ||||||||| | || Sbjct 147193 AATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGAT 147135 Query 23742 ATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGA 23801 ||||| ||||| ||||| || || | || || | | |||||||||||| || || || Sbjct 147134 CTTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGGA 147075 Query 23802 GTCCAC 23807 |||||| Sbjct 147074 GTCCAC 147069 >seq2 Length=1405217 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || |||||||| || |||||||| || || || || || Sbjct 409324 AAGATGCAGATTTTCGTCAAGACTCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 409265 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || ||||| || || | || || ||| Sbjct 409264 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAT 409205 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || || || || | ||||| | |||| ||| Sbjct 409204 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 409145 Query 23788 AACATACAAAAAGAG 23802 ||||| || || ||| Sbjct 409144 AACATCCAGAAGGAG 409130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009159214356