Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq20 145 2e-29 seq2 131 4e-25 seq82 120 7e-22 seq32 116 9e-21 seq30 87.8 4e-12 >seq20 Length=1074596 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||||||||||||||| || || |||| ||||||||||| | || Sbjct 147044 ACGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGT 147103 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || ||||| ||||| ||||| || || |||||||| || || || || Sbjct 147104 TCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCC 147163 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| ||| ||||| ||||| |||| || || || | Sbjct 147164 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAG 147223 Query 225672 CGTGATCGTCTTGCCCGT 225689 || || |||||||| || Sbjct 147224 GGTAATGGTCTTGCCAGT 147241 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||| || || |||| ||||||||||| | || | ||||| Sbjct 147685 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCC 147744 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || | ||| || ||||| || || || || |||||||| Sbjct 147745 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 147804 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| |||| || || || | || || ||| Sbjct 147805 TGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTAATGGTC 147864 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 147865 TTGCCCGTCA 147874 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| |||||| ||||| ||||| ||||| || || | ||||| ||| | ||| Sbjct 146816 ACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTGAGAGT 146875 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || ||||| || || |||||||||||||| || || || || ||||| || Sbjct 146876 TCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGAATGCC 146935 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| || || || || || | || || || | Sbjct 146936 CTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACCTCGAG 146995 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| ||||| | ||| || Sbjct 146996 GGTGATGGTCTTTCCCGTGAGAGTCTT 147022 Score = 109 bits (120), Expect = 1e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||| || || |||| ||||||||||| | || | ||||| Sbjct 147337 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCC 147396 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || | ||| || ||||| || || || || |||||||| Sbjct 147397 TCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 147456 Query 225622 TGGATCTT--TTGCTTCACAGC 225641 || ||||| |||||| |||| Sbjct 147457 TGAATCTTGNTTGCTTGCCAGC 147478 >seq2 Length=1405217 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||| || || |||| ||||| ||| || || | ||||| Sbjct 409110 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 409169 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| ||||| || || || || ||||| || |||||||| Sbjct 409170 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 409229 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 409230 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 409289 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | ||| || | ||| | ||||| || Sbjct 409290 TTCCCCGTGAGAGTCTTGACGAAAATCTGCATCTT 409324 >seq82 Length=51979 Score = 120 bits (132), Expect = 7e-22 Identities = 206/291 (71%), Gaps = 11/291 (4%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTG-GTATTAT-AGGTACTATATTTTCTATGA 7498 || |||||||||||||| | | ||||||| | ||||| |||||| ||||| | Sbjct 39026 ACATTATATTTAATATTCGCT--CTTTTCTCAGGATTATTAGGTACAGCTTTTTCAGTAT 38969 Query 7499 TTATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACT 7556 | || || || || |||| || || ||| |||| |||| | |||| ||| | Sbjct 38968 TAATTAGATTGGAGCTTAG-TGGACCAGGTGTTCAATATATCTCG----AATAATCAATT 38914 Query 7557 TTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGT 7616 || || ||||||||| || || || || | ||||| ||||| | |||||||| | Sbjct 38913 ATATAATAGTATTATTACAGCTCACGCTATTTTAATGATATTCTTCATGGTTATGCCTGC 38854 Query 7617 TATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 | | || || || || || || | || | ||||||||| | |||| |||||||||||| Sbjct 38853 TTTAATCGGGGGATTTGGTAACTTTTTAATGCCTTTAATGGTAGGTGGTCCTGATATGGC 38794 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || ||||| | || ||||||||||| |||||| |||| ||| |||||| Sbjct 38793 ATTCCCAAGATTAAATAATATAAGTTTCTGATTATTACCTCCTAGCTTATT 38743 >seq32 Length=2292469 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | |||| ||||| || |||||||| ||||| ||||| Sbjct 449925 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATG 449984 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || || || || ||||| || |||||||| |||||||| ||| || ||| Sbjct 449985 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 450044 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 450045 ATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 450103 >seq30 Length=762562 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 |||||||| |||| || | | ||| ||||||| |||||||| |||| ||| Sbjct 622192 TTCTGGTTACTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCAGTCTCG 622251 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | ||||| | ||||| || ||| || | ||||| || | ||| | | |||| Sbjct 622252 GTCTGAGCCTCAAGAATAGCATACCAGAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTG 622311 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || || ||||||||| || ||||| ||||||| || | |||||| ||| | ||| Sbjct 622312 CCAGCCTGCTCGTACTTCTCATACAGAGCCTCAAACTCATCGCCGTAGCAGTCGGCAAGA 622371 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 ||||| || || ||||| | ||| |||| || || | | || || | ||||||| Sbjct 622372 CCGGGGCACTCATTAGGGCACATGAGGGTCCAGTCGCCGTTCTTCTCAACACGCTTCATG 622431 Query 193740 AAGAGGTC 193747 ||||| || Sbjct 622432 AAGAGATC 622439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529565114258