Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq65 89.7 4e-13 seq26 89.7 4e-13 >seq65 Length=1864066 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 48511 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CTT 48569 |||||||| | | |||||| ||| | || |||| |||||||||||||| || | | Sbjct 1169642 GTCAAGGTTCGTGTCAGGACCACCAAGATTCCCCAGATCGGTGACAAGTTTGCCTCTCGT 1169701 Query 48570 CACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGAC 48627 ||||| |||||||| ||| ||| | | | ||| || ||||| ||||| ||| | Sbjct 1169702 CACGGT-CAAAAGGGTACAATTGGTGT--TACATACCGACAAGAGGATATGCCTTTCACC 1169758 Query 48628 AAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686 | ||| || ||| ||| || | |||||||||||||||||| |||| || | ||||| Sbjct 1169759 AGGGAGGGTGTGACGCCAGATATTATCATCAACCCCCACGCCATTCCGTCGCGAATGAC 1169817 >seq26 Length=867789 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||||||| | || || | ||| | || || || || | || |||||||| ||||| Sbjct 13472 GGGAAAGTCGCGTGGTTCGCGCTCCAATTGCGTATTGAGGGCCTCGACGTGATCGAGGTA 13531 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 ||||| ||||| |||| | || || |||||| | | | || |||||| || Sbjct 13532 CACGTGGGCGTCACCCATGACATGAGTAAGGCTTCCCGGGACCATCTCGCAGACGTGCGC 13591 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 || ||||| ||| || || | |||||| || || || || || || || || ||||| || Sbjct 13592 CAGCATGTGCGTTAGAAGGGCGTAGCTAGCAATATTGAACGGAACACCAAGACCCATATC 13651 Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308 | |||||||||||||| || || Sbjct 13652 GCAAGACCTCTGGTAGAGTTGGCA 13675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506718139517