Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20 114 3e-20 seq2 93.3 1e-13 >seq20 Length=1074596 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| || || |||||||| || || || |||||||| ||| | ||||| Sbjct 146820 AGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCTGAGAGTTCGT 146879 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || ||| |||||||||||||| | |||||| |||| | || || ||| Sbjct 146880 CCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGGAATGCCCTCC 146939 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | || | | || || |||||| || || || Sbjct 146940 TTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTACCTCGAGGGTG 146999 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||||||||| || |||| |||||| Sbjct 147000 ATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || ||||| ||||| || ||||||||||||||||| | |||| ||||| Sbjct 147053 GAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTTCGGCCATC 147112 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||| ||||| | | ||| || ||||| || Sbjct 147113 CTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTC 147172 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | |||| || ||| || || || ||||| || Sbjct 147173 CTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGT 147232 Query 152072 TTTGCCCGTGAGAGTCTTCAC 152092 ||||| ||||| ||||| || Sbjct 147233 CTTGCCAGTGAGGGTCTTGAC 147253 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || ||||| ||||| || ||||||||||||||||| | || | Sbjct 147678 GAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCG 147737 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || |||||||| || | | ||||||||||| | ||| || || Sbjct 147738 GCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTC 147797 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | |||| || ||| || || || || Sbjct 147798 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGT 147857 Query 152066 AATAGTTTTGCCCGT 152080 ||| || |||||||| Sbjct 147858 AATGGTCTTGCCCGT 147872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || ||||| ||||| || ||||||||||||||||| | || | Sbjct 147330 GAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCG 147389 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || |||||||| || | | ||||||||||| | ||| || || Sbjct 147390 GCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGGGATGCCCTC 147449 Query 152006 CTTTTCTTGAATTTT--TTGTTTGACAG 152031 ||| || ||||| || ||| ||| ||| Sbjct 147450 CTTGTCCTGAATCTTGNTTGCTTGCCAG 147477 >seq2 Length=1405217 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||| || ||||||||||| ||| | || | ||||| Sbjct 409109 GAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 409168 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | |||||| |||| | || || ||||| || Sbjct 409169 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTC 409228 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 409229 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGT 409288 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||||||||| ||||| | |||||| || || Sbjct 409289 CTTCCCCGTGAGAGTCTTGACGAAAATCTGCATCTTGCC 409327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819218183797