Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 183 6e-41 seq20 156 9e-33 seq32 138 2e-27 seq35 127 4e-24 >seq2 Length=1405217 Score = 183 bits (202), Expect = 6e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||||| || || |||||||||||||| Sbjct 409094 ACCACCACGCAGGCGGAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 409153 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || |||||||| | || || || || || Sbjct 409154 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCCGGGGG 409213 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 409214 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 409273 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | |||||| ||||| |||||||| || Sbjct 409274 CTCAAGGGTGATCGTCTTCCCCGTGAGAGTCTTGACGAAAATCTGCATCTT 409324 >seq20 Length=1074596 Score = 156 bits (172), Expect = 9e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || || Sbjct 147038 ACCACCACGAAGGCGGAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 147097 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || || |||||||||| ||| ||||||||| || Sbjct 147098 GAGGGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGG 147157 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || || | ||||||||||| || | ||||| Sbjct 147158 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGAC 147217 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| || || ||||| || || | ||||| || Sbjct 147218 CTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 147253 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || || Sbjct 147669 ACCACCACGGAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 147728 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| || ||||| || || ||||| || Sbjct 147729 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGG 147788 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | ||||| |||||||| | ||||| Sbjct 147789 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 147848 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| || || ||||| ||||||| Sbjct 147849 CTCGAGGGTAATGGTCTTGCCCGTCA 147874 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || ||||| || | || ||| || || ||||||||||| Sbjct 146810 ACCACCACGCAGTCGCAGGACCAGGTGCAGAGTAGATTCCTTCTGAATGTTGTAGTCGCT 146869 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || ||||| ||||| ||||| | || || || || || Sbjct 146870 GAGAGTTCGTCCGTCCTCAAGCTGTTTTCCGGCGAAGATAAGTCGCTGCTGATCCGGGGG 146929 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | ||||| | || ||||| || || | || || Sbjct 146930 AATGCCCTCCTTGTCCTGGATCTTCGACTTTACATTGTCAATAGTATCGGATGACTCTAC 146989 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | |||||| || || |||||||| Sbjct 146990 CTCGAGGGTGATGGTCTTTCCCGTGAGAGTCTTGACAAAGATCTGCAT 147037 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | || ||| || |||||||| ||||| Sbjct 146583 CCACCACGGAGACGGAGAACCAGGTGAAGAGTAGATTCCTTCTGGATGTTATAGTCGCTC 146642 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || |||||||| | || || |||||| ||| Sbjct 146643 AGAGTGCGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGAGGA 146702 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||| || || | || || Sbjct 146703 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTGTCGATGGTATCGCTTGACTCAACC 146762 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 146763 TCAAGAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATTTGCAT 146809 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || || Sbjct 147321 ACCACCACGGAGGCGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 147380 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| || ||||| || || ||||| || Sbjct 147381 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCCGGGGG 147440 Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015 || ||||||||||| || ||||| Sbjct 147441 GATGCCCTCCTTGTCCTGAATCTT 147464 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 ||| || || |||||||||| ||| ||||||||| || || ||||||||||| || || Sbjct 147467 TTGCTTGCCAGCAAAGATCAGACGCTGTTGGTCAGGGGGGATGCCCTCCTTGTCCTGAAT 147526 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 ||| | || || | ||||||||||| || | ||||| ||||| || || ||||| || Sbjct 147527 CTTGGACTTGACATTGTCGATAGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTGCC 147586 Query 283073 CGTCAAAGTCTTAAC 283087 || | ||||| || Sbjct 147587 AGTGAGGGTCTTGAC 147601 >seq32 Length=2292469 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || |||||||| Sbjct 449925 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATG 449984 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || || || ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 449985 AGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 450044 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 |||||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 450045 ATAGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 450103 >seq35 Length=674057 Score = 127 bits (140), Expect = 4e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| || ||| ||| | ||||| || ||||||||||||| || |||||| Sbjct 115241 AGGAGTTCCTTACCGAGGCTCTGCCTTGTGCCCTGCTCGGCATGAATGCCGACCTCATGA 115300 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 ||| || || || ||||| ||||| || | |||| || || || ||||||| || | Sbjct 115301 AGCAGTACATTGAGTTCGTTGCTGACCGACTACTCGTCGCTCTTGGTAACGAGAAGGTCT 115360 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 |||| || |||||||||| || |||||| ||| || ||| || || || |||| Sbjct 115361 ATAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACT 115420 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||| ||||||||| | || || || | ||||||| Sbjct 115421 TCTTCGAGAAGCGTGTCGGTGACTACCAGAAAGCCGGTGT 115460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737764985978