Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS1030_20[genbank_20GCA_5F000966855.1_202015-03-31] 107 sequences; 53,748,257 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20 154 4e-32 seq2 145 2e-29 >seq20 Length=1074596 Score = 154 bits (170), Expect = 4e-32 Identities = 145/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 147872 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCC 147813 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| ||||||||||| ||| | || |||||||| || Sbjct 147812 AAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAG 147753 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||||||| ||| |||| || || || || ||||| Sbjct 147752 CAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACTCTGCAC 147693 Query 178125 CTTGT 178129 ||||| Sbjct 147692 CTTGT 147688 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| ||||| || |||||||||||||| || || || Sbjct 147034 CAGATCTTTGTCAAGACTCTCACGGGAAAGACCATCACCCTCGAGGTAGAGTCATCCGAT 146975 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||||||| || || || || ||||| ||||| Sbjct 146974 ACTATTGACAATGTAAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAG 146915 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||||||||||||||| || || ||| | ||||| ||| || ||| | Sbjct 146914 CGACTTATCTTCGCCGGAAAACAGCTTGAGGACGGACGAACTCTCAGCGACTACAACATT 146855 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| || ||||| || || || |||| Sbjct 146854 CAGAAGGAATCTACTCTGCACCTGGTCCTGCGACT 146820 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || || || || ||||||||||| || ||| ||||| ||||| Sbjct 147253 GTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCGAC 147194 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| |||||||||||||| || || ||||| || ||||| || || || ||| Sbjct 147193 AATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGATC 147134 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || || || || ||||| ||||| | || || |||||||| ||| |||| || || Sbjct 147133 TTTGCTGGCAAGCAACTCGAGGATGGCCGAACCCTCGCCGATTACAACATCCAGAAGGAG 147074 Query 178113 TCAACACTGCATCTTGT 178129 || || || || ||||| Sbjct 147073 TCCACTCTCCACCTTGT 147057 Score = 132 bits (146), Expect = 1e-25 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||||||||| || || | || ||||| || ||||| || ||||| || |||| Sbjct 146806 CAAATTTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTTGAGTCAAGC--- 146750 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| ||||| || ||||| |||||||| || || || ||||| |||||| Sbjct 146749 GATACCATCGACAACGTGAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAG 146690 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || |||||||| || || || ||||| || || || | ||||| ||| |||||| Sbjct 146689 CAGCGCCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGCACTCTGAGCGACTATAAC 146630 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || ||||| || || || || ||| Sbjct 146629 ATCCAGAAGGAATCTACTCTTCACCTGGTT 146600 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| ||||||||||| ||| | || |||||||| || Sbjct 147464 AAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATTTTCGCCGGCAAG 147405 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||||||| ||| |||| || || || || ||||| Sbjct 147404 CAGCTTGAGGATGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACTCTGCAC 147345 Query 178125 CTTGT 178129 ||||| Sbjct 147344 CTTGT 147340 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || ||||| || || || || ||||||||||| || ||| ||||| ||||| Sbjct 147601 GTCAAGACCCTCACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACTATCGAC 147542 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| |||||||||||||| || || ||||| || ||||| || || || ||| Sbjct 147541 AATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAACAGCGTCTGATC 147482 Query 178053 TTCGCCGGAAAACA 178066 || || || || || Sbjct 147481 TTTGCTGGCAAGCA 147468 >seq2 Length=1405217 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| || || ||||||||||| |||||||| || ||| Sbjct 409318 CAGATTTTCGTCAAGACTCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 409259 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || || ||||| ||||| Sbjct 409258 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGATCAGCAG 409199 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 409198 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 409139 Query 178104 CAAAAAGA 178111 || || || Sbjct 409138 CAGAAGGA 409131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729549759758