Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq61 266 3e-66 seq11 141 1e-28 seq55 123 3e-23 seq1 123 3e-23 >seq61 Length=1579179 Score = 266 bits (294), Expect = 3e-66 Identities = 548/808 (68%), Gaps = 14/808 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || || Sbjct 1457135 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 1457076 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | || ||| | | |||| |||||| Sbjct 1457075 TCCAAGGACCTCCACGACTGGAACAACCGTCTGACCACTGATGAGCAGTTCTTCATCTCT 1457016 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| ||||| || ||| ||||| |||||||||||||| || ||||| Sbjct 1457015 CACATCCTTGCCTTCTTCGCTGCGTCCGATGGCATTGTCAACGAGAATCTCGTTGAGCGA 1456956 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | | ||||| || ||||||||||| || || ||| ||| Sbjct 1456955 TTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATCATGATG 1456896 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | |||||||| | ||||| ||||| ||||| ||| | | || | | Sbjct 1456895 GAGAACATTCACTCGGAGACCTATTCCCTGCTCATTGACACCTACATCAAAGAGCCCGCC 1456836 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | ||| || | | | | ||||| | || || || || ||| || | ||||||| Sbjct 1456835 CA--GCGAACCTACCTCT--TCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGC 1456780 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | || |||||| | || || | |||| | | |||| ||||| || Sbjct 1456779 TGACTGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAGCGTCTGGTTGC 1456720 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || |||||||| ||||||| || || ||| |||| || |||||||| Sbjct 1456719 CTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCTGGCTCAA 1456660 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || |||||||||||||| ||||| ||| ||||||||||||||| | || ||||| Sbjct 1456659 GAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGG 1456600 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || |||||| ||||| | || | || | | || | ||| | Sbjct 1456599 TCTTCACACCGACTTCGCCTGCCTTCTTCACTCCCACCTCAAGGGCCGTGCTAGCAAGCA 1456540 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | || ||| ||| | || || ||| |||| |||||| |||||||| || || Sbjct 1456539 GATGATCCAGGACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGC 1456480 Query 117289 GCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 || || |||| ||||| || | || | | | ||| ||| ||||| ||||| | Sbjct 1456479 CCTCCCCTGTGC-CCTGCTTGGCATGAACTCCAATCTCATGAAGCAGTACATTGAGTTTG 1456421 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||| ||| | ||||| ||| || | | || ||| |||||| | ||||||| Sbjct 1456420 TCGCTGACCGTCTGCTCGTCGCACTCGGCAACGAGAAGGTCTACAAGGCCACCAACCCCT 1456361 Query 117408 TGGACTTTATGAACCTCATCTC-CTTGG 117434 | ||||| ||| | |||||| ||||| Sbjct 1456360 TCGACTTCATGGAGAACATCTCTCTTGG 1456333 >seq11 Length=779747 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 735441 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 735500 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| ||| ||||||| Sbjct 735501 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 735559 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || ||||| || || | |||||||| | ||||||||| Sbjct 735560 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 735619 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 735620 CATCCAGAAGGAGTCCACTCTCCACCTGGT 735649 >seq55 Length=1684425 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || || |||||| |||| |||||| | | Sbjct 937180 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACTATCACCCTCGAGGTCGAATCAAGT 937121 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || ||| | ||||| Sbjct 937120 GACACTATTGATAACG-TGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCA 937062 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| ||||| | | ||||||||| Sbjct 937061 GCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAA 937002 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 937001 CATCCAGAAGGAGTCTACCCTTCACCTTGT 936972 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| ||||||||| | || || || | || Sbjct 937918 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTTGAGTCTTCC 937859 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| ||||||||||| | || ||| Sbjct 937858 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 937799 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| ||||| || || | ||||||||| || |||||| Sbjct 937798 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAAC 937739 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || ||||| || Sbjct 937738 ATTCAGAAGGAGTCTACCCTCCATCTCGT 937710 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| | || || || || |||| | | | Sbjct 937626 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGATACCATCG 937567 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| || || | |||||||| || | Sbjct 937566 ACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCTTG 937508 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | || |||||| ||||||||||||||||||| Sbjct 937507 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAG 937448 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || ||||| || Sbjct 937447 GAGTCCACCCTTCATCTCGT 937428 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| ||||| ||| |||| || || | | Sbjct 937408 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACCATAACCCTCGAGGTTGAGTCATCT 937349 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | || || ||||| || || | ||||| Sbjct 937348 GACACCATCGACAATGTGAAGAGTAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAA 937289 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| ||||| || ||||| |||| || ||||| ||||||||| Sbjct 937288 CAGCGACTTATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTTTCTGACTACAAC 937229 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || ||||| Sbjct 937228 ATTCAGAAGGAGTCAACTCTGCA 937206 >seq1 Length=5443851 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 4488452 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 4488511 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 4488512 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 4488571 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 4488572 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 4488631 Query 40879 G 40879 | Sbjct 4488632 G 4488632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218794264880