Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq55 107 2e-18 seq11 102 9e-17 seq1 96.9 4e-15 >seq55 Length=1684425 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||||| || || || | || || |||||||| |||||||| Sbjct 937727 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 937786 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | ||||||||| || | || | || |||||||||| ||| | || | |||| Sbjct 937787 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGACAT 937845 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | |||||||| ||||| || | ||||| | Sbjct 937846 TGTCGATAGTGTCGGAAGACTCAACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 937905 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 937906 CGAAGATTTGCAT 937918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||| || |||| || ||||||||||||||||| Sbjct 936989 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 937048 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || || ||||||||||| | || | | |||||||| | ||| | || | || | Sbjct 937049 GATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGT-CTTGAATCTTGCTCTTCACGT 937107 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || |||| ||||| || || || || || ||||| | Sbjct 937108 TATCAATAGTGTCACTTGATTCGACCTCGAGGGTGATAGTCTTTCCAGTGAGAGTCTTGA 937167 Query 43171 CAAAGATTTGCAT 43183 |||| || ||||| Sbjct 937168 CAAAAATCTGCAT 937180 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||| ||||| ||||| |||| || || || |||| || Sbjct 937200 ACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCCTCC 937259 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| || ||||| || |||||||| ||||| | || | | |||||| ||| | Sbjct 937260 AGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTATCCTGG 937319 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || || | | | | ||||| || || || |||| || ||||| ||| Sbjct 937320 ATCTTACTCTTCACATTGTCGATGGTGTCAGATGACTCAACCTCGAGGGTTATGGTCTTG 937379 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| || ||||||||||| Sbjct 937380 CCGGTTAAGGTCTTGACGAAGATTTGCAT 937408 >seq11 Length=779747 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || |||||||||||||| || Sbjct 735632 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 735573 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 735572 GATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 735514 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 735513 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 735454 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 735453 CGAAAATCTGCAT 735441 >seq1 Length=5443851 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||| || | || || ||||||||||||||||| | Sbjct 4488632 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 4488573 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 4488572 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 4488513 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 4488512 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 4488453 Query 43174 A 43174 | Sbjct 4488452 A 4488452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817149693640