Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq44 286 3e-72 seq55 109 5e-19 seq11 100 3e-16 >seq44 Length=2799272 Score = 286 bits (316), Expect = 3e-72 Identities = 639/954 (67%), Gaps = 14/954 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || |||||| | || || || || Sbjct 2095154 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 2095213 Query 23087 AGATTGCTACACTTT---ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 ||||| | | || || || || | || |||||||||| || || || || | | Sbjct 2095214 AGATT---AGAGCTTCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCA 2095270 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 |||||||| |||||| | || | || |||||| ||| | ||| | ||| || ||| Sbjct 2095271 TCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCAAGGATGGCATACCAA 2095330 Query 23204 ATAGTCTGAGCGTGAAC--ACGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 | ||||||| | | || | || | | ||||| || ||| ||||||| | ||| Sbjct 2095331 AGCTTCTGAGCCTTGATGGACTTGCGACCCTTACCTTCCCTCT----CGTACTTCTCGTA 2095386 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| || ||||||| |||||||| || || || | | | || ||||| Sbjct 2095387 GAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACAT 2095446 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || ||||| | || || ||||| || |||| |||||||| || ||||| || || Sbjct 2095447 AAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGATCAGGGATCCAGAGGGC 2095506 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| ||||||||||| |||||||| || ||| ||||||| | ||| | || Sbjct 2095507 CAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 2095566 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | |||||| || || |||| ||| || Sbjct 2095567 CTCGAAGACATCAGCGTGCCAAGGCTCTAGGTAGATGGCAAAAGCACCAGGTCGCTTGTT 2095626 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 || |||||||| ||||| ||||| ||||||||| | || | |||||| || || | ||| Sbjct 2095627 ACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACC 2095686 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||||| | ||| || || | || || | || || | ||| | | Sbjct 2095687 GTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATT 2095746 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || || || || || ||||| || || || || || || ||||| Sbjct 2095747 GAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGAT 2095806 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || || ||||||||||| || | | |||||||| || || || | || | || || Sbjct 2095807 ACCGTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGG 2095866 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| || || ||| || || || ||| | | ||||| || || Sbjct 2095867 GGTACCAGCATTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTT 2095926 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 || || || | | | ||||| || || || || || || | || ||||| || Sbjct 2095927 ATATGTCTCCACGACACGCTCAATATCATCACCCCAGATGCCAATAGACACACGCATGAT 2095986 Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 ||||| ||||| | |||||| | ||||| ||| |||| || ||||| || | || Sbjct 2095987 CATGTGCTGAGGACGCTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAA 2096046 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || ||||| || | || | || ||||| |||| || ||||| || Sbjct 2096047 TGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCAGA 2096100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 264/401 (66%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 |||||||| || |||||||| ||||| ||||| | |||||| | || || || Sbjct 2094272 GTGCGAAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTG 2094331 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | || | ||||| | |||| || || ||||||||| Sbjct 2094332 GTGATCTTGCCCATCGTGGGATCCTTCATGTGAATGTTGAGGGATTGGGACTGATCGATG 2094391 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCATCGACATTTCCCATACGGT 22323 || || ||||| ||||| ||||| | | ||| | ||| || || ||||| || || Sbjct 2094392 AATGCACCTCGGTCGGCAGCCATCTGGA-CAACCTGGCGCTGAGAAATCTCCCAAACAGT 2094450 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGTTA 22381 |||||| || | ||| || || || ||| | || |||| | || |||||| Sbjct 2094451 CTTGTAAAGAGCCTTGACGTCGGCAGGGAT--ATTGGGGATGTTCTGAATAGAACCGTTA 2094508 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | || || || || || | ||| |||||| || ||| || | ||||||| Sbjct 2094509 TCGGAAATAATACGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACAAGATCTTTG 2094568 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || ||||| || | | ||| ||||| |||||||||||| Sbjct 2094569 AGCAACCAGGGGTTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTG 2094628 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTG 22542 || ||| | || ||||| | || ||||| ||||| ||||| Sbjct 2094629 GAGGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTG 2094669 >seq55 Length=1684425 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || || || |||||| |||| || ||| | Sbjct 937180 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACTATCACCCTCGAGGTCGAATCAAGT 937121 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || |||||||| || | || || |||||| Sbjct 937120 GACACTATTGATAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 937061 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| | ||| ||||||| || ||| Sbjct 937060 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAC 937001 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||||| || || || |||| | |||||| Sbjct 937000 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGT 936953 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| |||| ||||| || |||||| | || ||||| | || Sbjct 937919 CATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTTGAGTCTTC 937860 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || ||||||||| ||| | || || || || Sbjct 937859 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 937800 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| ||| | ||||| || | ||||| || Sbjct 937799 GCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAA 937740 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || || || ||||| || || Sbjct 937739 CATTCAGAAGGAGTCTACCCTCCATCTCGTCCT 937707 >seq11 Length=779747 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 735440 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 735499 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 735500 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 735559 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 735560 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 735619 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 735620 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 735652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766048958960