Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq44 161 1e-34 seq61 122 1e-22 >seq44 Length=2799272 Score = 161 bits (178), Expect = 1e-34 Identities = 455/696 (65%), Gaps = 12/696 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||||||||||| | || || || ||||| || Sbjct 2095426 AGGGCACTCGTTGGGGCACATAAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAA 2095485 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||||| ||||| || || | || || || | | | ||||| || || Sbjct 2095486 AAGATCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTG 2095545 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| ||||| Sbjct 2095546 GTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCTAGGTAGATGGC 2095605 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || ||||| || |||||||| | ||| | || ||||| || | || Sbjct 2095606 AAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGAC 2095665 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| || |||||| ||| |||| |||||||| | || ||| ||| | Sbjct 2095666 ACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGT 2095725 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | |||| ||||| || || || ||||| || || || | || Sbjct 2095726 GGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCA 2095783 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | || |||||||| || || ||||| || || |||||| || | || Sbjct 2095784 CAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATGTCAACCAAGAAG 2095843 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || || | ||| | ||| || || ||||| || | ||| || ||||| || || Sbjct 2095844 CATGAGGAAAGCTGGGGTTGAGGGGTACCAGCATTGAAGAGGGTGGGGGAAGCATGGGTG 2095903 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTG 63754 || | || || | || || || ||||| | | || ||||| || | Sbjct 2095904 AAGAACTTGCTGGACATAAGGTTATATGTCTCCACGACACGCTCAATATCATCACCCCAG 2095963 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 ||| || | | |||||||| | |||||||||||| | || ||||| ||| || Sbjct 2095964 ATG----CCAATAGACACACGCATGATCATGTGCTGAGGACGCTCGACAATCTTGCCGTC 2096019 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 || || | | ||| ||| ||||| || || || ||||| || | |||| || || Sbjct 2096020 AATCTTGAGGAGGTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATC 2096079 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || ||||| | ||| | || | |||| ||||| Sbjct 2096080 ACGGTCGTAGACAATGGCAGAGTCTAGCTCTTCCTT 2096115 >seq61 Length=1579179 Score = 122 bits (134), Expect = 1e-22 Identities = 364/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||| |||||||| || | | || | ||||| || || || || Sbjct 1456579 CAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 1456638 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || ||||| || || | || |||||| Sbjct 1456639 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAG 1456698 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||||| ||||||| || | || || | | | | |||| || Sbjct 1456699 ATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGTAGAGTCCTTGTCCTGG 1456758 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 1456759 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 1456817 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| ||| || | ||||| | || || || || | || ||| | Sbjct 1456818 GAAGAGGTAGGTTCGCTGGGCGGGCTCTTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 1456877 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||| |||||||| || || || || ||||||||||| |||| |||||| | || Sbjct 1456878 CTCCGAGTGAATGTTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 1456937 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | ||||| || | | ||| || || || || ||||| || || Sbjct 1456938 CTGGACCTCGCCGCTGAATCGCTCAACGAGATTCTCGTTGACAATGCCATCGGACGCAGC 1456997 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || || || | | || || | || | | || ||||| Sbjct 1456998 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCATCAGTGGTCAGACGGTTGTTCCA 1457057 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | || || || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 1457058 GTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTT 1457117 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 1457118 CTTGTACATTTGCCAGAT 1457135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817104018640