Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq44 172 7e-38 seq61 114 2e-20 >seq44 Length=2799272 Score = 172 bits (190), Expect = 7e-38 Identities = 627/967 (65%), Gaps = 32/967 (3%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTAT 71750 || ||||| || || || || ||||| || ||||||| || |||| || | || Sbjct 2095144 CAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGG---GGCACAGTACTCGAT 2095200 Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 || |||||||| |||||| | |||||| || | || | || || ||||| Sbjct 2095201 GATCTCAGTGCACAGATTAGAGCTTCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCG 2095260 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 |||||| |||||||| ||||| || || || | || || || |||| | || | || Sbjct 2095261 GTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCAAGGAT 2095320 Query 71871 CGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTCGT 71926 || | ||| | | || ||||||| || |||| | ||| ||| || |||| Sbjct 2095321 GGCATACCAAA-GCTTCTGAGCCTTGATGGA---CTTGCGACCCTTACCTTCCCTCTCGT 2095376 Query 71927 A-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATT 71983 | || | ||| | | || ||||| || || | ||| | | | | ||||| || | Sbjct 2095377 ACTTCTCGTAGAGGGCC--TCAAACTCTTCACCGTA-GCAGTCGGCAAGACCAGGGCACT 2095433 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 | || || ||||| | | ||||||||| | | | || || ||||| || ||||||| Sbjct 2095434 CGTTGGGGCACATAAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGATCAG 2095493 Query 72044 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 72103 | ||||| || || | || || || | || | |||||| || || |||||| Sbjct 2095494 GGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTC 2095553 Query 72104 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 ||||| |||||| | | | ||||| ||||| || || | ||| ||||| | | | | Sbjct 2095554 GGAGATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCTAGGTAGATGGCAAAAGCAC 2095613 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 72223 | || || ||||| || |||||||| | ||| | || ||||| || | || | | || Sbjct 2095614 CAGGTCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCA 2095673 Query 72224 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 72283 | |||| || ||| ||||||| ||| ||||| || | || ||| ||| ||||||| | Sbjct 2095674 TAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGA 2095733 Query 72284 TAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 | || ||||| |||| || || || ||||| || || || | || || || Sbjct 2095734 TTCGGTGGGCATTGA--GACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTT 2095791 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 | ||||||||||| || || || || || ||| |||||| || | || || || Sbjct 2095792 GAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAGGA 2095851 Query 72402 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 72461 | ||| | || || || ||||| || | ||| || ||||| || || || | || Sbjct 2095852 AAGCTGGGGTTGAGGGGTACCAGCATTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTT 2095911 Query 72462 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGTATTC 72517 |||| || || || ||||| | | || ||||| || |||| | Sbjct 2095912 GCTGGACATAAGGTTATATGTCTCCACGACACGCTCAATATCATCACCCCAGATG----C 2095967 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | | | |||||||| | ||| |||||||| | || || |||||| | || || | Sbjct 2095968 CAATAGACACACGCATGATCATGTGCTGAGGACGCTCGACAATCTTGCCGTCAATCTTGA 2096027 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||| ||| ||||| || || || ||||| || | |||| || || || |||| Sbjct 2096028 GGAGGTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGT 2096087 Query 72638 AAATAAT 72644 | | ||| Sbjct 2096088 AGACAAT 2096094 >seq61 Length=1579179 Score = 114 bits (126), Expect = 2e-20 Identities = 274/411 (67%), Gaps = 5/411 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||| ||||||||||| | | || | |||||||| || || || Sbjct 1456579 CAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 1456638 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||||||||| || ||||| || || || ||||| | ||| |||||| Sbjct 1456639 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAG 1456698 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241 || || || || || || ||||||| || | || || | | | | |||| || Sbjct 1456699 ATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGTAGAGTCCTTGTCCTGG 1456758 Query 42242 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 1456759 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 1456817 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| ||| || | ||||| | || || || || | || ||| | Sbjct 1456818 GAAGAGGTAGGTTCGCTGGGCGGGCTCTTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 1456877 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || |||||||| || || || || ||||||||||| |||| ||||| | | Sbjct 1456878 CTCCGAGTGAATGTTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 1456937 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 ||| || || | ||||| ||| | | ||| ||||| || || || || Sbjct 1456938 CTGGACCTCGCCGCTGAATCGCTCAACGAGATTCTCGTTGACAATGCCATC 1456988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138671477880