Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq44 178 2e-39 seq61 131 2e-25 >seq44 Length=2799272 Score = 178 bits (196), Expect = 2e-39 Identities = 635/984 (65%), Gaps = 24/984 (2%) Strand=Plus/Plus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||||| || || || || ||||| || ||||||| || | || | || || Sbjct 2095144 CAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGAT 2095203 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||||||||| |||||| | ||| || || | || | || || ||||| ||| Sbjct 2095204 CTCAGTGCACAGATTAGAGCTTCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 2095263 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 ||| |||||||| ||||| ||||| || | || || || |||| | || | || || Sbjct 2095264 ACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCAAGGATGGC 2095323 Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT---TTCTCTTTCGTA-- 63121 | ||| | | || ||||||| || || ||| | | | ||| || ||||| Sbjct 2095324 ATACCAAA-GCTTCTGAGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACT 2095379 Query 63122 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | ||| | | || ||||| || || | | | | | ||||| || || | Sbjct 2095380 TCTCGTAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTT 2095437 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 || ||||| | | ||||||||||| | || || || ||||| || |||||||| || Sbjct 2095438 GGGGCACATAAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGATCAGGGAT 2095497 Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 ||| || || | || || || | || | ||||| || || |||||| || Sbjct 2095498 CCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAG 2095557 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 ||| |||||| | | | ||||| ||||| || || | ||| ||||| | | | ||||| Sbjct 2095558 ATCAAGGAACTCGAAGACATCAGCGTGCCAAGGCTCTAGGTAGATGGCAAAAGCACCAGG 2095617 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || ||||| || |||||||| | ||| | || ||||| || | || | | ||| || Sbjct 2095618 TCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGG 2095677 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--A 63479 || || |||||| ||| |||| |||||||| | || ||| ||| ||||||| || Sbjct 2095678 AACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCG 2095737 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 | |||| ||||| || || || ||||| || || || | || || || | Sbjct 2095738 GTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGG 2095795 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 || ||||||||||| || ||||| || || |||||| || | || || || | Sbjct 2095796 GTATCATAGATACCGTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAGGAAAGC 2095855 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| | || || || ||||| || | ||| || ||||| || || || | || Sbjct 2095856 TGGGGTTGAGGGGTACCAGCATTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTG 2095915 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTAC 63715 || | || || || ||||| | | || ||||| || |||| || | Sbjct 2095916 GACATAAGGTTATATGTCTCCACGACACGCTCAATATCATCACCCCAGATG----CCAAT 2095971 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 | |||||||| | |||||||||||| | || || |||||| || || || | | Sbjct 2095972 AGACACACGCATGATCATGTGCTGAGGACGCTCGACAATCTTGCCGTCAATCTTGAGGAG 2096031 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 ||| ||| ||||| || || || ||||| || | |||| || || || ||||| | Sbjct 2096032 GTATGATCGCTCCAATGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGAC 2096091 Query 63836 AATAACCGAGTTGAGTTTATCCTT 63859 ||| | |||| || | ||||| Sbjct 2096092 AATGGCAGAGTCTAGCTCTTCCTT 2096115 >seq61 Length=1579179 Score = 131 bits (144), Expect = 2e-25 Identities = 366/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| |||||||| || | | || || |||||||| || || || Sbjct 1456579 CAGGCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGA 1456638 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || ||||| || || | ||| |||||| Sbjct 1456639 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAG 1456698 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || ||||| ||||||| || | || || | | | | |||| || Sbjct 1456699 ATACCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAAGGTAGAGTCCTTGTCCTGG 1456758 Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 1456759 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 1456817 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| ||| || | ||||| | || || || || | || ||| | Sbjct 1456818 GAAGAGGTAGGTTCGCTGGGCGGGCTCTTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 1456877 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||||| |||||||| || || || || ||||||||||| |||| |||||| | || Sbjct 1456878 CTCCGAGTGAATGTTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 1456937 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | ||||| || | | ||| || || || || || || || || Sbjct 1456938 CTGGACCTCGCCGCTGAATCGCTCAACGAGATTCTCGTTGACAATGCCATCGGACGCAGC 1456997 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 33776 || || || | | || || || | | || || | || | | || ||||| Sbjct 1456998 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCATCAGTGGTCAGACGGTTGTTCCA 1457057 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | || || || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 1457058 GTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTT 1457117 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 1457118 CTTGTACATTTGCCAGAT 1457135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946709429080