Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq55 116 3e-21 seq11 113 4e-20 seq1 86.0 5e-12 >seq55 Length=1684425 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || ||||| || || |||| || || || || | || Sbjct 937918 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTAGAGGTTGAGTCTTCC 937859 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| || || || ||||| Sbjct 937858 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAG 937799 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | || ||| ||||||| |||| ||||||||| Sbjct 937798 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAAC 937739 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || || ||| | ||| Sbjct 937738 ATTCAGAAGGAGTCTACCCTCCAT 937715 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || || |||||||| | ||| | |||| Sbjct 937612 ACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGATACCATCGACAACGTCAAGTCG 937553 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || ||||| ||||| Sbjct 937552 AAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCTTGATCTTTGCTGGCAAG 937493 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| ||| || |||| |||||||| || || || |||||| | ||| Sbjct 937492 CAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTTCAT 937433 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || |||||||| || || | || || || || || | | Sbjct 937408 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACCATAACCCTCGAGGTTGAGTCATCT 937349 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || || |||||||||||||| || || ||| Sbjct 937348 GACACCATCGACAATGTGAAGAGTAAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAA 937289 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || |||||||| || | ||||| || ||| | || || |||||| Sbjct 937288 CAGCGACTTATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTTTCTGACTACAAC 937229 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || ||| | || |||| || ||| Sbjct 937228 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGGT 937181 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || || |||| || || || ||| | | Sbjct 937180 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACTATCACCCTCGAGGTCGAATCAAGT 937121 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || ||||||||||||||||||||||| || || || Sbjct 937120 GACACTATTGATAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 937061 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||| | ||||| ||||| | ||| |||||| Sbjct 937060 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAC 937001 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || | ||| | ||| | || || ||| Sbjct 937000 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGT 936953 >seq11 Length=779747 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| ||||| ||||| | || Sbjct 735441 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 735500 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 735501 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 735560 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||| | |||||| ||||||| | ||| |||||| Sbjct 735561 CAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAAC 735620 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 735621 ATCCAGAAGGAGTCCAC 735637 >seq1 Length=5443851 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 4488451 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 4488510 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 4488511 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 4488570 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || || || ||| | |||||| ||| || ||||||| |||||||| || || Sbjct 4488571 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 4488630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727677727595