Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq61 143 5e-29 seq4 122 2e-22 seq1 111 3e-19 seq44 100 6e-16 >seq61 Length=1579179 Score = 143 bits (158), Expect = 5e-29 Identities = 309/458 (67%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | |||||||| |||| Sbjct 1456291 TGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCC 1456350 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| ||||| ||||| ||| | ||| ||||| |||| | Sbjct 1456351 ATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGTGCGACGAGCAGA 1456410 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || |||||||| | ||||| ||| || | ||||||||||||| || | Sbjct 1456411 CGGTCAGCGACAAACTCAATGTACTGCTTCATGAGATTGGAGTTCATGCCAAGCAGGGCA 1456470 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTG-- 251779 || || | |||||| || ||| |||| || ||| || || | ||||| || Sbjct 1456471 CAGGGGAGGGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCAT----CACAAATGAT 1456526 Query 251780 --CCT---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCG 251832 ||| ||| ||| ||| || || || || || | |||| || || | Sbjct 1456527 GTCCTGGATCATCTGCTTGCTAG-CACGGC----CCTTGAGGTGGGAGTGAAGAAGGCAG 1456581 Query 251833 CCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCA 251892 | || | ||| |||||||| || ||| ||||| ||||||||| | ||| || Sbjct 1456582 GCGAAGTCGGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCG 1456641 Query 251893 GGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGA 251952 ||||| | ||||| ||| ||||||||||||| | | ||||| ||| ||| | | | Sbjct 1456642 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAGATA 1456701 Query 251953 CCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA 251990 ||||||||| | | ||||| || |||| ||||| Sbjct 1456702 CCCTCGACAGCAGCGAAGGCAACCAGACGCTGGGCAAA 1456739 >seq4 Length=1130759 Score = 122 bits (134), Expect = 2e-22 Identities = 437/674 (65%), Gaps = 17/674 (3%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || ||||| || ||||||||||| ||||||||||| || | || || || | | Sbjct 681211 AGTTGGATCTCTTTCTGGTGGTTGGAAAATGAAGCTGGCTCTAGCCCGAGCTATGTTGCA 681152 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||||||||| || || || || || || || ||||| | || ||||| | || Sbjct 681151 GCGTGCCGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 681092 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTC--ATTGTCTCTCAC 279872 ||||| | | | || || | ||||| | | || | || ||||| |||||| Sbjct 681091 ATGGCTCGAGACTTATCTCA--AGTCTCACACCGATATCACCAGTCTTATTGTTTCTCAC 681034 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 ||||| || ||| | ||| ||| | ||| ||| ||||| |||| || |||| Sbjct 681033 GACTCCGGATTCTTGGATAACGTTACCACTGATATCTACCACTACGAGCCCAACAAGAAG 680974 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || | ||| ||||||||| |||||||| | ||||||||||| Sbjct 680973 CTGGCTTGTTACAAGGGCAACCTGAACGCTTTCGTTCAGATCCGCCCTGAGGCCAAGAGT 680914 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| |||| | | |||| | ||| | |||||| || || | ||| || Sbjct 680913 TACTACACCCTGTCCGCCTCCACTGTTCAGTTCAAGTTCCCTCCTCCTGG-TATCTTGAC 680855 Query 280053 -GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || | | || | ||| || || || | | ||| |||||| | || || Sbjct 680854 CGGTGTTAAGTCTCAAACTCGTGCTATTATCCGCATGTCCAA--CGTCTCATACGCCTAC 680797 Query 280110 CCCAATGGCCCCAACATCTTC-----AGCAGTGTCAACTCGCAGGTTTCTATGAACTCAC 280164 || |||| | |||| | |||| || || ||| || || | || | ||| | Sbjct 680796 CCTAATG-CACCAAAACCTTCTCTCGAGGAG-GTCTCCTGTCAACTGACTCTCTCCTCTC 680739 Query 280165 GGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTG 280224 | ||| | ||||||| ||||| ||||| || ||||| || || ||||| | || |||| Sbjct 680738 GTGTTGCTATCATTGGCCCCAACGGTGCTGGCAAGTCGACACTCATCAAGCTGCTTACTG 680679 Query 280225 GCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 |||||||| || || || ||| |||||| || ||| | || || | |||| Sbjct 680678 GCGAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCTAACCTCCGTATCGGTTACA 680619 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 | |||||||| | | ||| | |||| ||| |||| | ||||||||||| ||| Sbjct 680618 TTAAGCAGCACGCCCTGGAGCACGTTGAGATGCACTTGGAGAAAACTCCTAACCAGTACC 680559 Query 280345 TTCAGTGGCGCTAT 280358 |||||||||| ||| Sbjct 680558 TTCAGTGGCGTTAT 680545 >seq1 Length=5443851 Score = 111 bits (122), Expect = 3e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 2625384 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 2625325 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 2625324 CAGACCCATCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 2625265 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 2625264 GGAAAGTCCACTCTTATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 2625206 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| |||||||| Sbjct 2625205 GGACGAGGTCAAGACTGTCTTCGTCGAGCACGACCTCGACTCC 2625163 >seq44 Length=2799272 Score = 100 bits (110), Expect = 6e-16 Identities = 202/299 (68%), Gaps = 12/299 (4%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGA------GCGTTCT 218571 ||||||||| |||| ||||| ||||| ||| ||||| | || ||| || Sbjct 640137 GACTTCATCAACAAAGAGCTTATTCTCTTCA----GTATG--GCCGACAACATGCGATCC 640190 Query 218572 ATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTC 218631 || || ||| ||||||| ||||||| ||||| ||| || | | ||| ||| Sbjct 640191 ATCCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTCATATATGCTTGCTTC 640250 Query 218632 AAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATT 218691 ||| | ||| | || | || | ||||| | | | || |||||||||| |||||| Sbjct 640251 AAGAGAAACATTGTCAAGGATAAGAAGGTTGTTGAATTGGCTGGTTATGTGTCCGAACAA 640310 Query 218692 TCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGAC 218751 | | ||||| |||||||||||| ||| ||| ||||| ||||| | || ||| || Sbjct 640311 ACGGCGTACCACCACGGTGAGCAGTCTCTTCAGCAGACCATTATAGGCCTTGCTCAGAAC 640370 Query 218752 TATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 | ||||||| |||||||| |||| || |||| || | || |||||||| || Sbjct 640371 TTTGTGGGCTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACT 640429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835970342983