Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq61 352 5e-92 seq44 320 3e-82 >seq61 Length=1579179 Score = 352 bits (390), Expect = 5e-92 Identities = 601/857 (70%), Gaps = 22/857 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| || Sbjct 1457135 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 1457076 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAAC----GAAAAGTTTTTCCTCAA 42415 |||||||| || |||| | || |||||| || || |||| ||| || Sbjct 1457075 TCCAAGGACCTCCACGACTGGAACA-ACCGTCTGACCACTGATGAGCAGTTCTTCATCTC 1457017 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || ||||||||||| || || || ||||| ||||| ||||| || | | Sbjct 1457016 TCACATCCTTGCCTTCTTCGCTGCGTCCGATGGCATTGTCAACGAGAATCTCGTTGAGCG 1456957 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | |||||| || ||||||||||| ||||| || || Sbjct 1456956 ATTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATCATGAT 1456897 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| || || ||||||| |||| |||||| || || Sbjct 1456896 GGAGAACATTCACTCGGAGACCTATTCC---CTGCTCATTGACACCTACATCAAAGAGCC 1456840 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 || | |||| | | || ||||| || | || || || ||||||||| |||||||| Sbjct 1456839 CGCCCAGCGAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGC 1456780 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| | |||||| || ||| | || || | | || | ||||| || Sbjct 1456779 TGACTGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAGCGTCTGGTTGC 1456720 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| | || |||||||| ||||||||| || ||||| |||||||||||||||||||| Sbjct 1456719 CTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCTGGCTCAA 1456660 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || |||||||| || |||||||| ||||| |||||| | || |||| Sbjct 1456659 GAAGCGTGGCCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 1456601 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCG 42890 | || || | ||||| |||||||| || ||| ||||||| ||| | || | Sbjct 1456600 GTCTTCACACCGACTTCGCCTGCCTTCTTCACTC---CCACCTCAAGGGCCGTGCTAGC- 1456545 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 ||| || | ||| || |||||| || ||||| || ||| ||||||||||||| Sbjct 1456544 AAGCAGATGATCCAGGACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACT 1456485 Query 42951 CAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||| ||||| | ||||||||| | | |||||| ||||||| | Sbjct 1456484 GAGGCCCTCCCCTGTG-CCCTGCTTGGCATGAACTCCAATCTCATGAAGCAGTACATTGA 1456426 Query 43010 GTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGT 43068 || ||||| |||| ||| || || || || || | ||||||| | | Sbjct 1456425 GTTTGTCGCTGACCGTCTGCTCGTCGCACTCGGCAACGAGAAG-GTCTACAAGGCCACCA 1456367 Query 43069 GCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGC 43128 |||||||||||| |||||||||||||| | | |||||||||||||| |||||||||| Sbjct 1456366 ACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTCTTCGAGAAGC 1456307 Query 43129 GCGTCGCCGACTACCAG 43145 | ||||| ||||||||| Sbjct 1456306 GTGTCGCTGACTACCAG 1456290 >seq44 Length=2799272 Score = 320 bits (354), Expect = 3e-82 Identities = 1107/1711 (65%), Gaps = 53/1711 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || ||| |||| |||| || | |||||||||||||| |||||| Sbjct 2094239 ACGGTGAACTGGATAGGAGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCCAGTCTTG 2094298 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | || ||||||| || | ||| |||| || || Sbjct 2094299 AGACCAAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATCGTG------GGA 2094352 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | ||| | |||||||| ||| ||| |||| ||| | | || || Sbjct 2094353 TCCTTCATGT---GAATG---TTGAGGGATTGGGACTGATCGATGAATGCACCTCGGTCG 2094406 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || | | |||||| ||||| | | |||||||| | | |||| Sbjct 2094407 GCAGCCATCTGGACAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGCCTTG 2094466 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 | || | |||| ||||||||| | || || || | | || | || | Sbjct 2094467 ACGTCGGCAGGGATATTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAATACGGTTC 2094526 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTT 244092 |||| ||| ||||| ||||| | | || | | || ||||| | || Sbjct 2094527 TTCATGGCATCAGACCACAAGCCCATGTCGACAAGATCTTTGAGCAACCAGGGG----TT 2094582 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||| ||||| || | || || ||||||||||| | |||| | || ||||| Sbjct 2094583 GACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTC 2094642 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || ||| |||| ||||| ||||||| || || ||||| ||||| || | | || Sbjct 2094643 GAAGCACTCGTTGTTACCCAGAATCTGCGAAGTACTGGCAGTAGGCATAGGGGCGAGGAG 2094702 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAG-CTCGTTCCAGTCCCACA 244271 ||||||||| | | ||||| ||| | || || ||| | ||||||||| | Sbjct 2094703 CAGACTGTTACGGATACCGTGAGTCTTAACATCCTCTCGAAGACTC-TCCCAGTCCCAAA 2094761 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | | || ||| |||| | ||||||||| ||||| || | |||| | Sbjct 2094762 GGTCGGA-AGGC--------TTGACGTTCCACATGTCGAACTGGAGAATACCCTCAGAGG 2094812 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCG 244390 |||| |||| | |||| | ||||||||| || || ||||| || || | | Sbjct 2094813 CGGGAGAACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAGGCAG 2094872 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 | |||||| |||| |||||||||||| |||||| |||||| | || | |||| | Sbjct 2094873 T-GAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCGGGA 2094931 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||||| |||| || | ||| | || || || ||||| || || | ||| Sbjct 2094932 GACTCAAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAAGACCG 2094991 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 || |||| ||| ||| ||||| | || || | || ||||| ||| | ||| Sbjct 2094992 ATAGGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGTACAGGGTAGTGATTGACATCG 2095051 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAAGTC 244629 || | |||||| | ||||||| || || | ||| ||| | |||| || ||||| Sbjct 2095052 ATGATCTTGTTCAAGTTGCGGACGA-CAACCTGACTGACCTGATGCAGCTTCTTGAAGTC 2095110 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 || | | | || ||| | || ||| || | | ||||| | | ||| Sbjct 2095111 ATA---GCAAGCCTCATCGTAGTTGATGA-------AAGCAGGC--AGGGCAAGGGAGGC 2095158 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 |||||||| || || ||||| || | | ||||| || ||||| ||||| || || Sbjct 2095159 AAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATT 2095218 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809 | || |||||| || |||| || || ||| |||| ||| ||||| |||||||| Sbjct 2095219 AGAGCTTCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTA 2095278 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCT 244869 ||||||||||| ||||||||| |||||| | |||| | | ||| || | | Sbjct 2095279 AAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCAAGGATGGCATACCAAAGCTTCTG 2095338 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 |||||||| | | ||||| |||| || || |||||| ||| |||||||| || Sbjct 2095339 AGCCTTGATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAA 2095398 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| || || ||| | || || |||||| |||||||| || ||||||| Sbjct 2095399 CTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATAAGGGTCCACTC 2095458 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 ||| | || || | || |||||| || || ||||||||||||||| |||| ||||| Sbjct 2095459 TCCGTTCTTCTCAACACGCTTCATGAAAAGATCAGGGATCCAGAGGGCCAGGAACAGGTC 2095518 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | || | ||| ||| || |||||| | || || | || || ||||| || Sbjct 2095519 GCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATC 2095578 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 ||||||| ||||| | ||||| || | || || || |||||||| || ||||| || Sbjct 2095579 AGCGTGCCAAGGCTCTAGGTAGATGGCAAAAGCACCAGGTCGCTTGTTACCACCCTGATC 2095638 Query 245170 CACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 || | | || | |||||||| || || |||| || | ||||| || | Sbjct 2095639 AACGTAGCGGGC-AGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTAC 2095697 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA--GGTTGCTGATGGACATGCCTAG 245286 ||||||| || ||||||| ||| || | | || | || || || | || | Sbjct 2095698 CGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTGAGA--CCAAT 2095755 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || || || |||||| || | ||| ||| |||||| ||| || || || || || Sbjct 2095756 ACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAAT 2095815 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 ||||||| |||||||| | || ||||| ||||| |||||||| | ||| | | | Sbjct 2095816 GCTGTCCTCCTTCATGTCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGC 2095875 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||| || |||||| || ||||| ||| Sbjct 2095876 ATTGAAGAGGGTGGGGGAAGCATGGGTGAAG 2095906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338456332880