Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq55 116 9e-21 seq11 107 5e-18 seq61 102 2e-16 seq1 95.1 3e-14 >seq55 Length=1684425 Score = 116 bits (128), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || |||| || || || |||| || || || ||||| || |||||| Sbjct 936951 TGACCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 937010 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| ||||| || | || || || |||||||| |||||||| || | Sbjct 937011 CTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGG 937070 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || || || || || ||| |||||||| || |||| || || ||||| Sbjct 937071 GGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACGTTATCAATAGTGTCACTTGATTC 937129 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || ||||||||||| || |||||||| Sbjct 937130 GACCTCGAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 937180 Score = 116 bits (128), Expect = 9e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||||| ||| || || ||||| || ||||||||| Sbjct 937410 CCACCACGAAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 937469 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||||| ||||| || | || Sbjct 937470 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 937529 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| |||| || ||||| || || | |||| || || || Sbjct 937530 ATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCAACC 937589 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || || ||||| ||||| || || || |||||||||| Sbjct 937590 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 937626 Score = 111 bits (122), Expect = 4e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | || || || || || || || || | | Sbjct 937692 CCACCACGGAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGAG 937751 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || ||||| |||| ||||| ||| | ||| Sbjct 937752 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCAGGAGGG 937811 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || || || || |||| ||| || || || Sbjct 937812 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 937871 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| ||||||| ||||||||||| || ||||| ||| Sbjct 937872 TCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGATG 937922 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || |||||||| || | ||| || || |||||| Sbjct 937218 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAG 937277 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || |||||||| | || || || || ||||||||||| || ||||| || Sbjct 937278 ATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTTACTCTTCACATTG 937337 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| || || ||||| ||||| | ||||||||| Sbjct 937338 TCGATGGTGTCAGATGACTCAACCTCGAGGGTTATGGTCTTGCCGGTTAAGGTCTTGACG 937397 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 937398 AAGATTTGCAT 937408 >seq11 Length=779747 Score = 107 bits (118), Expect = 5e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || |||||| Sbjct 735667 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 735608 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| || ||||| || || ||| Sbjct 735607 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGG---TCCGGG 735551 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 735550 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCC 735491 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || |||||||||||||| || || ||||||||||| |||||||| ||| Sbjct 735490 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATGATG 735437 >seq61 Length=1579179 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||| | ||| || |||| ||| | || | || ||||| || |||||||||| Sbjct 1456496 GAGTTCCTCACTGAGGCCCTCCCCTGTGCCCTGCTTGGCATGAACTCCAATCTCATGAAG 1456437 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238 || || || || || || ||||| ||| | || |||||||| | ||||| || ||| Sbjct 1456436 CAGTACATTGAGTTTGTCGCTGACCGTCTGCTCGTCGCACTCGGCAACGAGAAGGTCTAC 1456377 Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298 || | | || ||||||| ||| ||||| || || || | || ||||| |||||| Sbjct 1456376 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTC 1456317 Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324 ||||| ||||||||| ||||| || Sbjct 1456316 TTCGAGAAGCGTGTCGCTGACTACCA 1456291 >seq1 Length=5443851 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| || || || || || | || || || ||||||||| Sbjct 4488630 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 4488571 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||| || || || || |||||||| || | || || || Sbjct 4488570 AGTCGCTGTTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 4488514 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 4488513 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 4488454 Query 288463 AA 288464 || Sbjct 4488453 AA 4488452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653447797714