Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq55 154 3e-32 seq11 134 3e-26 >seq55 Length=1684425 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || |||||||| || || |||||||| |||| ||||||||| |||||| Sbjct 936960 CGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTG 937019 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || |||||||| |||||||||||||| || ||| || Sbjct 937020 CGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCC 937079 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| || | ||||| ||| ||| || || | Sbjct 937080 TCCTTGTCTTGAATCTTGCTCTTCACGTTATCAATAGTGTCACTTGATTCGACCTCGAGG 937139 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || |||||||| || Sbjct 937140 GTGATAGTCTTTCCAGTGAGAGTCTTGACAAAAATCTG 937177 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| |||||||| || | ||||||||||| | || | ||| || Sbjct 937197 AGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCC 937256 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||||||||| || ||||| ||||| ||| ||| || || ||| Sbjct 937257 TCCAGTTGCTTGCCGGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTATCC 937316 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | || || || || | || || ||| Sbjct 937317 TGGATCTTACTCTTCACATTGTCGATGGTGTCAGATGACTCAACCTCGAGGGTTATGGTC 937376 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 937377 TTGCCGGTTAAGGTCTTGACGAAGATTTG 937405 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || || |||||||| |||| ||||||||| || | || Sbjct 937416 CGAAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTT 937475 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| | ||||||||||| ||| |||||| Sbjct 937476 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATTCCC 937535 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| || | | || || || | Sbjct 937536 TCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCAACCTCAAGA 937595 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || ||||| || || || Sbjct 937596 GTGATGGTCTTGCCAGTGAGGGTCTTGAC 937624 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||||||||| || |||||| |||| || || | |||||| ||| |||||| ||||| Sbjct 937054 CTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAACATCCAG 936995 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || |||||||| |||||||||||| | ||||||| Sbjct 936994 AAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCG 936960 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || |||||||| || | |||||| |||| | || | |||||| Sbjct 937707 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCT 937766 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || | |||||||| || ||| || || || ||| Sbjct 937767 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCC 937826 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||||| | | || || || | ||||| ||| Sbjct 937827 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCTAGGGTGATGGTC 937886 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 937887 TTGCCGGTCAAGGTCTTGACGAAGATTTG 937915 >seq11 Length=779747 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| || || | ||||| Sbjct 735652 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 735593 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| || |||||||||||||| ||| || || ||| Sbjct 735592 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 735533 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||||||| Sbjct 735532 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 735473 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || ||||| || Sbjct 735472 TTCCCCGTGAGGGTCTTGACGAAAATCTG 735444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920648389221