Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq61 221 1e-52 seq11 116 4e-21 seq55 114 1e-20 seq1 114 1e-20 >seq61 Length=1579179 Score = 221 bits (244), Expect = 1e-52 Identities = 557/833 (67%), Gaps = 33/833 (4%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || || || ||||| || ||| | ||| || || |||||||| Sbjct 1456309 TTCTCGAAGAAGTTGGTCTTGCCA-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 1456367 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | |||||| ||| | |||||| | |||||||||| | ||| || || || Sbjct 1456368 GGTGGCCTTGTAGACCTTCTCGTTGCCGA---GTGCGACGAGCAGACGGTCAGCGACAAA 1456424 Query 132741 CTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGC-AGCGCTT 132799 ||| ||||| ||| |||| | | | || | || ||||| |||| || || || | Sbjct 1456425 CTCAATGTACTGCTTCATGAGATTGGAGTTCATGCCAAGCAGG-GCACAGGGGAGGGCCT 1456483 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | ||||| || ||||| |||| ||| || || | ||| ||| | | | Sbjct 1456484 CAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCCTGGATCATCTGCT 1456543 Query 132860 CGCT----CGGCCGTTGCACCAAATGCT--TGAACATCAAGCAAGCAAAGTCGCAATGCA 132913 ||| ||||| ||| | || |||| | | ||| || |||||| || | Sbjct 1456544 TGCTAGCACGGCCCTTG----AGGTGGGAGTGAAGA--AGGCAGGCGAAGTCGGTGTGAA 1456597 Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 ||||| || | || ||||| |||||| ||| |||| |||||||||||||| || | Sbjct 1456598 GACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCT 1456657 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 | |||||||| || |||| ||| || || ||||||| |||||||| || |||| Sbjct 1456658 TCTTGAGCCAGAAGATGGAGGCAAAGGCACCACTGAAGAAGATACCCTCGACAGCAGCGA 1456717 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG--CTGGCGATCCAGCGCAGCGCCCA 133091 | || ||||| |||| | | || || | || ||| ||| |||||| || | ||||| Sbjct 1456718 AGGCAACCAGACGCTGGGCAAAGGTAGAGTCCTTGTCCTG--GATCCATCGAATGGCCCA 1456775 Query 133092 TTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTC 133151 || ||||| | | || ||| || || || || | ||||| | | | | || ||| | Sbjct 1456776 GTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGA--AGAGGTAGGTTCGC 1456833 Query 133152 TTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTC 133209 | || | | ||||||||| ||||| ||||| | |||||||| | |||| Sbjct 1456834 TGGGCGGGCTCTTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCCGAGTGAATGTTC 1456893 Query 133210 TCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG 133269 ||||| |||||| || ||||| ||||| || ||||| | ||| || || | Sbjct 1456894 TCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCTCGCCGCTG 1456953 Query 133270 AAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACG 133329 || ||||| || ||||| |||||||| ||||| ||| || ||||| ||||| || | | Sbjct 1456954 AATCGCTCAACGAGATTCTCGTTGACAATGCCATCGGACGCAGCGAAGAAGGCAAGGATG 1457013 Query 133330 TGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTG 133386 || |||||| |||| | | ||| || | ||||||| | ||||||| Sbjct 1457014 TGAGAGATGAAGAACTGCTCATCAGTGGTCAGACGGTTGTTCCAGTCGTGGAGGTCCTTG 1457073 Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 1457074 GAGAGATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 1457126 >seq11 Length=779747 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 735441 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 735500 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 735501 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 735559 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 735560 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 735619 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||| || || Sbjct 735620 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 735655 >seq55 Length=1684425 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| ||||| ||| |||| || ||| | | Sbjct 937408 ATGCAAATCTTCGTCAAGACCTTAACCGGCAAGACCATAACCCTCGAGGTTGAGTCATCT 937349 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| || || ||||| ||||| | |||| Sbjct 937348 GACACCATCGACAATG--TGAAGAGTAAGATCCAGGATAAGGAGGGTATTCCTCCTGACC 937291 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || || | ||| ||||| || ||||| |||| || ||||| ||||||| Sbjct 937290 AACAGCGACTTATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTTTCTGACTACA 937231 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||||| | || ||||| ||||| || ||| || | || || Sbjct 937230 ACATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 937182 Score = 104 bits (114), Expect = 2e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || || |||||| |||| ||||| | | Sbjct 937180 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACTATCACCCTCGAGGTCGAATCAAGT 937121 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 937120 GACACTATTGATAACG--TGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACC 937063 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| || || |||||||| |||| ||||| | | |||||||| Sbjct 937062 AGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACA 937003 Query 38422 ACATCCAAAAGGA 38434 ||||||| ||||| Sbjct 937002 ACATCCAGAAGGA 936990 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || || ||| || |||| | | | Sbjct 937626 TCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCCGATACCATCG 937567 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||||||||| | ||||| ||||| | Sbjct 937566 ACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGCTTG 937508 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 937507 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAG 937448 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || ||| | || || || Sbjct 937447 GAGTCCACCCTTCATCTCGTCCTCCG 937422 >seq1 Length=5443851 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 4488452 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 4488511 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 4488512 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 4488571 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || || ||| ||||||||||||||| ||| Sbjct 4488572 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 4488631 Query 38433 G 38433 | Sbjct 4488632 G 4488632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172406113920