Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq44 197 2e-45 seq61 129 7e-25 seq12 86.0 8e-12 >seq44 Length=2799272 Score = 197 bits (218), Expect = 2e-45 Identities = 928/1447 (64%), Gaps = 59/1447 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || | || || ||| || || |||||||| ||| Sbjct 2095998 CCTCAGCACATGATCATGCGTGTGTCTATTGGCATCTGGGGTGATGATATTGAGCGTGTC 2095939 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||||||||| || |||||| | | |||| ||| || | || ||||||||| Sbjct 2095938 GTGGAGACATATAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCACCCTCTTC 2095879 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || |||||||| || |||||| | ||| || ||| | ||| | |||||||| Sbjct 2095878 AATGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGACATGAAGGAGGAC 2095819 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || || | || |||| |||||| || || ||| ||||||| Sbjct 2095818 AGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGATGGCTGGT 2095759 Query 111852 GGTATCGGG----ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGT 111905 ||||| || |||| || | | || | |||| | ||| || || ||| Sbjct 2095758 GGTATTGGTCTCAATGCCCACCGAA----TCCGTGCCACT--GGCTCCTACATTGCTGGT 2095705 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || ||| ||| | ||| || |||| ||||| || || || ||| ||| || ||| Sbjct 2095704 ACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCCCGC 2095645 Query 111966 TATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCA 112019 || || | || | ||| | |||| || || | || |||| || ||||| Sbjct 2095644 TACGTTGATCAGGGTGG---TAACAAGCGACCTGGTGCTTTTGCCATCTACCTAGAGCCT 2095588 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||||| ||| || | ||||||||||| | || ||||| ||| | ||||||| Sbjct 2095587 TGGCACGCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTC 2095528 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || |||||| || ||| || |||||||| || ||||| ||||||||| | |||||| Sbjct 2095527 CGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGATCTTTTCATGAAGCGTGTTGAG 2095468 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| || | ||| | || | || || || || || ||||| |||| | Sbjct 2095467 AAGAACGGAGAGTGGACCCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTAC 2095408 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 ||||| |||||||| ||||||||| ||||||||| ||| || || | | || | Sbjct 2095407 GGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGG-GTC-GCAA-- 2095352 Query 112260 GTGC--CA--GCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 || | || ||| | || | | ||| | || || || || | || |||||||| || | Sbjct 2095351 GTCCATCAAGGCT-CAGAAGCTTTGGTATGCCATCCTTGAGGCCCAGACCGAGACCGGAA 2095293 Query 112315 CACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 112374 || | ||||||||||| || |||||||||| ||||| || || ||||| | ||| Sbjct 2095292 ACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGGTA 2095233 Query 112375 TGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 112434 ||| || || || || || || || ||| | || | | | |||||| | Sbjct 2095232 CCATCCGAAGCTCTAATCTGTGCACTGAGATCATCGAGTACTGTGCCCCTGATGAGGTCG 2095173 Query 112435 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 112494 |||| || ||||| || || | || || || | | || || || | || Sbjct 2095172 CTGTTTGCAACCTTGCCTCCCTTGCCCTGCC----TGCTTTCAT-CAACTACGATGAGGC 2095118 Query 112495 TTG--ATTA--TGAA-AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAG 112549 ||| || | | || || || || | || | | |||| ||| | |||| Sbjct 2095117 TTGCTATGACTTCAAGAAGCTGCATCAGGTCAGTCAGGTTGTCGTCCGCAACTTGAACAA 2095058 Query 112550 AGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCG 112609 | || ||| ||| ||||| || | ||||| || || ||| | ||||| Sbjct 2095057 GATCATCGATGTCAATCACTACCCTGTACAAGAGGCTCGCAACAGCAACATGCGTCACCG 2094998 Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCAT 112668 || || ||||| |||||||| ||||| || |||| ||| || || || ||| | | Sbjct 2094997 ACCTATCGGTCTTGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTG-CGCATGCCCT 2094939 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 |||| || ||| || | || |||| || || |||||||| || || ||||| | Sbjct 2094938 TTGAGTCTCCCGAGGCTAGAGAGCTCAACAAGCAGATCTTTGAGACCATCTACCACGCTG 2094879 Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 | || || | ||||||| ||| || ||||| || ||||| |||||| Sbjct 2094878 CCCTCACTGCCTCCGTGCAGTTGGCCAAGGAGGAGGGTCCCTACTCTACCTTCAAGGGTT 2094819 Query 112789 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-- 112845 |||| || || | || | || || || || |||| |||| || |||| |||| Sbjct 2094818 CTCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGT-GGAACGT-----CAAGCCTTCCG 2094765 Query 112846 AC---TACGACTGGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAG 112900 || | |||||||| || || || | | | | ||| | ||| | |||||||| Sbjct 2094764 ACCTTTGGGACTGGGAGAGTCTTCGAGAGGATG--TTAAGACTCACGGTATCCGTAACAG 2094707 Query 112901 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 ||| | | || || ||||| || ||| || | || || ||||||| || || || Sbjct 2094706 TCTGCTCCTCGCCCCTATGCCTACTGCCAGTACTTCGCAGATTCTGGGTAACAACGAGTG 2094647 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 ||| || || ||||| | ||||| || | | | || ||| || || ||||| | | Sbjct 2094646 CTTCGAGCCTTACACCTCCAACATTTACCAGCGCCGAGTCCTTGCTGGTGAGTTCCAGGT 2094587 Query 113021 TGTCAAC 113027 ||||||| Sbjct 2094586 TGTCAAC 2094580 >seq61 Length=1579179 Score = 129 bits (142), Expect = 7e-25 Identities = 344/512 (67%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAAT 101873 |||||||| || ||| | |||||||| ||||| | |||| ||||| | ||| | Sbjct 1457099 TGGACTGCCGAGGAGATTGATCTCTCCAAGGACCTCCACGACTGGAACAACCGTCTGACC 1457040 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 |||| || ||||| ||||||| || ||||| |||| ||||||||| ||| Sbjct 1457039 ACTGATGAGCAGTTCTTCATCTCTCACATCCTTGCCTTCTTCGCTGCGTCCGATGGCATT 1456980 Query 101934 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 101991 || |||||| || | | | | | || | ||||| || |||| |||| || ||| Sbjct 1456979 GTCAACGAGAATCTCGTTGAGCGATTCAGCGGC-GAGGTCCAGATCC-CTGAGGCTCGAT 1456922 Query 101992 CTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 102050 ||||| | | ||| |||| ||| | | | || |||||| || ||| Sbjct 1456921 GCTTCTACGGATTCCAAA-TCATGATGGAGAACATTCACTCGGAGACCTATTCCCTGCTC 1456863 Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAAC 102109 || |||| || || || || || || ||| | | ||||| | || | | || Sbjct 1456862 ATTGACACCTACATCAAAGAGCCCGCCCAGC-GAACCTACCTCTTCAACGCTGTTGATAC 1456804 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || || | |||||| || || ||||| || ||| | | |||| | | | Sbjct 1456803 CATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTC 1456744 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | ||||||| |||| || | || || || ||| ||||||||||||||| |||| Sbjct 1456743 -TACCTTTGCCCAGCGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGTGGTG 1456685 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | |||||||||||||| || |||||||| ||||| |||||||| Sbjct 1456684 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTCTGACCTTCTCCA 1456625 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||| ||||||||||| ||||| || ||| Sbjct 1456624 ACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 1456593 >seq12 Length=4630793 Score = 86.0 bits (94), Expect = 8e-12 Identities = 179/261 (69%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 || ||||| ||||| ||||||| ||| || || ||| | ||| | | |||| ||| Sbjct 1666808 GCGTCAATTTCATCGATGAAGATGATACAGGGAGCATTCTTGCGGCCTTCGGCAAACAGA 1666749 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || || ||||| | || ||||| || |||||||| || || | | || ||| Sbjct 1666748 TCTCGCACACGAGAAGGACCGACACCCACGAACATCTCAACGAATTCGGAACCGCTCACA 1666689 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || | |||||| || ||| || || || |||| ||| || | |||||||| || Sbjct 1666688 CTGAA-GAAGGGCACTCCAGACTCGCCAGCCGTGGCCTTGGCAAGCAACGTCTTACCAGT 1666630 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 16300 ||| || || || |||| |||||||| |||||||||||||| |||| | || | Sbjct 1666629 ACCAGGAGGGCCAGCCAGGATAGCACCTCGAGGAATCTTGGCGCCCAGCTTCTCGAACT- 1666571 Query 16301 TCTCTCAGGTTGCTTAAGAAA 16321 ||||||| ||||| || || Sbjct 1666570 --TCTCAGGCTGCTTCAGGAA 1666552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741911165360