Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq55 86.0 5e-12 seq1 86.0 5e-12 seq11 84.2 2e-11 >seq55 Length=1684425 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||||||||| || | || | || || | |||||| || || || Sbjct 937727 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCGAA 937786 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||| ||||| | || | |||||||||||| |||||| || ||| Sbjct 937787 AATCAATCGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 937846 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | ||| ||||| | || || || || || ||||| || || || Sbjct 937847 GTCGATAGTGTCGGAAGACTCAACCTCTAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 937906 Query 48755 AAAAATCTGCAT 48766 || || ||||| Sbjct 937907 GAAGATTTGCAT 937918 >seq1 Length=5443851 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || ||| |||| | || || | ||||||||| || || ||| Sbjct 4488630 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 4488571 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| |||| ||||| |||||||||||| Sbjct 4488570 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 4488536 >seq11 Length=779747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| ||| || || || ||||| || || | || | || || Sbjct 735649 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 735590 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| ||||| || |||||||| || |||| ||||| |||||||||||| Sbjct 735589 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 735530 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | ||||||||| | || ||||| || Sbjct 735529 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 735470 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | || || || ||||||||||| Sbjct 735469 CCCGTGAGGGTCTTGACGAAAATCTGCAT 735441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937307511349