Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq61 212 1e-49 seq44 210 4e-49 >seq61 Length=1579179 Score = 212 bits (234), Expect = 1e-49 Identities = 558/852 (65%), Gaps = 14/852 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| ||||| ||||||||||| Sbjct 1457135 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 1457076 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||||||| | ||| |||| || ||| ||| || |||||| || || Sbjct 1457075 TCCAAGGACCTCCACGACTGGAACAACCGTCTGACCACTGATGAGCAGTTCTTCATCTCT 1457016 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || ||||| || || ||||||||||| ||| || Sbjct 1457015 CACATCCTTGCCTTCTTCGCTGCGTCCGATGGCATTGTCAACGAGAATCTCGTTGAGCGA 1456956 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| | ||||| || |||||||| ||||| || || Sbjct 1456955 TTCAGCGGCGAGGTCCAGATCCCTGAGGCTCGATGCTTCTACGGATTCCAAATCATGATG 1456896 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| ||| || ||| | || ||||| | ||| |||| Sbjct 1456895 GAGAACATTCACTCGGAGACCTATTCCCTGCTCATTGACACCTACATCAAAGAGCCCGCC 1456836 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 || || || || || | || ||| ||| ||||| | |||||| Sbjct 1456835 CAGCGAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGCTGAC 1456776 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||| | | || | |||| |||| | |||| ||||| ||||| Sbjct 1456775 TGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAGCGTCTGGTTGCCTTC 1456716 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 |||||||| ||||| ||||| ||||| ||| | ||||| ||||||||||||||||| || Sbjct 1456715 GCTGCTGTCGAGGGTATCTTCTTCAGTGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAG 1456656 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||| ||||||||||||||| | || |||||||| Sbjct 1456655 CGTGGCCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTT 1456596 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT--CAAG 26071 |||| || || |||||||| ||| ||| |||| ||| | | | || |||| Sbjct 1456595 CACACCGACTTCGCCTGCCT--TCTTCAC-TCCCAC---CTCAAGGGCCGTGCTAGCAAG 1456542 Query 26072 -AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 ||| || | ||||| || || || || ||| ||||||| | Sbjct 1456541 CAGATGATCCAGGACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAG 1456482 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| || ||||||| || |||||||||| | Sbjct 1456481 GCCCTCCCCTGTGCCCTGCTTGGCATGAACTCCAATCTCATGAAGCAGTACATTGAGTTT 1456422 Query 26191 GTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCC 26249 || || |||| |||||| || || || || || | |||||| | | ||||| Sbjct 1456421 GTCGCTGACCGTCTGCTCGTCGCA-CTCGGCAACGAGAAGGTCTACAAGGCCACCAACCC 1456363 Query 26250 GTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 |||||||| ||||| ||||| || | | || |||||||||||||| || ||| | || Sbjct 1456362 CTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGT 1456303 Query 26310 CGGCGACTATCA 26321 || ||||| || Sbjct 1456302 CGCTGACTACCA 1456291 >seq44 Length=2799272 Score = 210 bits (232), Expect = 4e-49 Identities = 718/1103 (65%), Gaps = 51/1103 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT-TGGCCTCGGG 221475 || |||||||||||||||||||||||||||||| ||||||||| |||| | |||||||| Sbjct 2094872 GTGAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAG-CTCTCTAGCCTCGGG 2094930 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 ||| |||||||| ||||| | | ||||| | || || || ||||| || || | | Sbjct 2094931 AGACTCAAAGGGCATGCGCAG-AGCAAGGAAAG-CATCAGCAAGACCCTGGACACCAAGA 2094988 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 ||||| || | ||| | | ||||| | ||| || ||| | || || || |||| Sbjct 2094989 CCGATAGGTCGGTGACGCATGTTGCTGTTGCGA--GCCTCTTGTACAGGGTAGTGATTGA 2095046 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| | ||| | || || | | |||| |||||||| | Sbjct 2095047 CATCGATGATCTTGTTCAAGTTGCGGACGACAACCTGACTGACCTGATGCAGCTTCT--T 2095104 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 || | | ||| ||| | ||| || || | ||||| ||||||| Sbjct 2095105 GAAGTCATAGCAA---GCCTCATCGTAGTTGATG---------AAAGCAGGCAGGGCAAG 2095152 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | ||| ||||| || || || ||||| || | |||| |||||||| || || Sbjct 2095153 GGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCA 2095212 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 || || || |||||| || |||| || || || |||||| || || || Sbjct 2095213 CAGATTAGAGCTTCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATC 2095272 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| ||||| ||||| || ||||| ||| ||| | || || | ||| || Sbjct 2095273 CTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCAAGGATGGCATACCAAAG 2095332 Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942 | |||| || | | | | | ||| || | | |||| ||| || | Sbjct 2095333 CT-TCTGAGCCTTGATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTC-------G 2095384 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 || || || | |||||| ||||||||| ||| | || || || ||| | ||| | Sbjct 2095385 TAGAGGGCCT--CAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGC 2095442 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 |||| || |||| | ||| | | || | || |||||| || || |||||||| | Sbjct 2095443 ACATAAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGATCAGGGATCCAGA 2095502 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | ||| | || || || | || || ||||||| |||| ||| || | ||||| | Sbjct 2095503 GGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 2095562 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | ||||||||||| ||||| || |||| ||| | ||| || ||||||| Sbjct 2095563 GGAACTCGAAGACATCAGCGTGCCAAGGCTCTAGGTAGATGGCAAAAGCACCAGGTCGCT 2095622 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 |||| |||||||||| || | | ||| | |||||||| || || | || || Sbjct 2095623 TGTTACCACCCTGAT-CAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACA 2095681 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGTTA 222298 | ||||||||| ||||||||| || |||||| | || ||| | | ||| Sbjct 2095682 ACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGT-- 2095739 Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 |||| | || |||||||| || || || |||||||| ||| ||||||| || Sbjct 2095740 -GGGCATTGAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTA 2095798 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| || || || ||||||||| | || | || || || || || | ||| Sbjct 2095799 TCATAGATACCGTCAATGCTGTCCTCCTTCATGTCAACCAAGAAGCATGAGGAAAGCTGG 2095858 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | || | || || || || || || ||||| || || || ||| | || ||| Sbjct 2095859 GGTTGAGGGGTACCAGCATTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGAC 2095918 Query 222479 ATCAGATCGTACGTCTCTACGAC 222501 || || | || ||||| ||||| Sbjct 2095919 ATAAGGTTATATGTCTCCACGAC 2095941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844068534720