Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq55 105 4e-17 >seq55 Length=1684425 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || ||||| || ||| || || || || ||||||| || || Sbjct 937697 ACGGAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGAGAGGGT 937756 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| ||||| ||||| ||||| | || || ||||||||||| || || Sbjct 937757 GCGGCCATCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCAGGAGGGATGCC 937816 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| |||||| || ||||| || | | | || || | Sbjct 937817 CTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAA-CCTCTA 937875 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || ||||| | ||||| ||||| ||||| Sbjct 937876 GGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTG 937915 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 |||||| ||||| ||||| ||||| ||| || || | || || || ||| | || Sbjct 936959 ACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTC-GCTCAAAG 937017 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | || || || ||||| ||||| || |||||||| || || ||||| ||||| | Sbjct 937018 TGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATAC 937077 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 | ||||||||||||||||| || || |||||||| ||| | | || | Sbjct 937078 CCTCCTTGTCTTGAATCTTGCTCTTCACGTTATCAATAGTGTCACTTGATTCGACCTCGA 937137 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| || || ||||||||||| || ||||| || Sbjct 937138 GGGTGATAGTCTTTCCAGTGAGAGTCTTGACAAAAATCTG 937177 Score = 95.1 bits (104), Expect = 8e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || |||||||| || || || | || || || || || || Sbjct 937415 ACGAAGGCGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGT 937474 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||| ||||| |||||||| || | || || || |||||||||||||| Sbjct 937475 TCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATTCC 937534 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||| || || ||||| | | | ||||| Sbjct 937535 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCAACCTCAAG 937594 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 || || || || || ||||| ||||| |||| Sbjct 937595 AGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 937626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176497624324