Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20sp._20JS626_20[genbank_20GCA_5F000966865.1_202015-03-31] 63 sequences; 42,866,936 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 118 1e-20 seq61 116 5e-20 seq7 114 2e-19 >seq12 Length=4630793 Score = 118 bits (130), Expect = 1e-20 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||| ||||||||||| || || ||| |||| ||||| | || ||||||||||| Sbjct 2953624 CAACTACCTTGACATCAAGCCCCTCCTTGATGTTGGCTGCAAAACCGTTGCCAACATGAT 2953565 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||| || ||||| || |||||||| || ||||||| | ||| Sbjct 2953564 CAAGGGCAAGTCTCCTGAGGAAATTCGCAAGACGTTCAACATCACGAACG 2953515 >seq61 Length=1579179 Score = 116 bits (128), Expect = 5e-20 Identities = 205/292 (70%), Gaps = 15/292 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| || |||||||||||||| ||||| Sbjct 1456599 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGGCCACGCTT 1456658 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACGGCGGCA 869296 ||||||||| ||||||| | | || || | | ||| ||||| |||||||| || || Sbjct 1456659 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCACTGAAGAAGATACCCTCGACAGCAGCG 1456716 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353 ||| | | || |||| ||||||| || ||| |||||| | |||||| || Sbjct 1456717 AAGGCAACCAGACGCTGGGCAAAG--GTAGAG----TCCTTGTCCTGGATCCATCGAATG 1456770 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412 |||||||| ||||| || | | | || | || || | ||| ||||||| ||| Sbjct 1456771 GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTT 1456830 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | | ||| || || |||| |||||||| || || || |||||||||||| Sbjct 1456831 C-GCTGGGCGGGCTCTTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCC 1456881 Score = 105 bits (116), Expect = 8e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| |||||||||||||| | || ||||| Sbjct 1456285 GCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGAGAGATG 1456344 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | || Sbjct 1456345 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGTGCGACG 1456404 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC 868866 ||||| ||||| ||||||||||| |||||||| |||||| || ||||||||| Sbjct 1456405 AGCAGACGGTCAGCGACAAACTCAATGTACTGCTTCATGAGATTGGAGTTCATGCC 1456460 >seq7 Length=1018574 Score = 114 bits (126), Expect = 2e-19 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || || || ||||| ||||| | |||||||| ||| Sbjct 936458 GACAGCACTGGCGGAACCGTCACCTGTGTCATCCGCAATGTGCCCTCTGGCCTCGGTGAG 936517 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | |||||||| |||||| |||| ||||| || ||| Sbjct 936518 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCATGCCATGATGTCCATCCCTGCTACC 936577 Query 19167 AAGGGATTCGAGATTGGC 19184 |||||||||||| | ||| Sbjct 936578 AAGGGATTCGAGCTGGGC 936595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134029924971